Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   P8F79_RS06675 Genome accession   NZ_CP121172
Coordinates   1343642..1346032 (+) Length   796 a.a.
NCBI ID   WP_048539661.1    Uniprot ID   -
Organism   Mammaliicoccus sciuri strain PC04     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1338642..1351032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8F79_RS06655 (P8F79_06650) sal(A) 1338949..1340574 (+) 1626 WP_048539657.1 ABC-F type ribosomal protection protein Sal(A) -
  P8F79_RS06660 (P8F79_06655) - 1340634..1341782 (+) 1149 WP_048539658.1 cysteine desulfurase family protein -
  P8F79_RS06665 (P8F79_06660) mnmA 1341775..1342884 (+) 1110 WP_048539659.1 tRNA 2-thiouridine(34) synthase MnmA -
  P8F79_RS06670 (P8F79_06665) - 1342971..1343639 (+) 669 WP_048539660.1 tetratricopeptide repeat protein -
  P8F79_RS06675 (P8F79_06670) recD2 1343642..1346032 (+) 2391 WP_048539661.1 ATP-dependent RecD-like DNA helicase Machinery gene
  P8F79_RS06680 (P8F79_06675) alaS 1346283..1348913 (+) 2631 WP_048539662.1 alanine--tRNA ligase -
  P8F79_RS06685 (P8F79_06680) - 1348981..1349250 (+) 270 WP_037588397.1 IreB family regulatory phosphoprotein -
  P8F79_RS06690 (P8F79_06685) ruvX 1349243..1349671 (+) 429 WP_025904238.1 Holliday junction resolvase RuvX -
  P8F79_RS06695 (P8F79_06690) - 1349691..1349996 (+) 306 WP_025904237.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 796 a.a.        Molecular weight: 90435.71 Da        Isoelectric Point: 4.6363

>NTDB_id=810839 P8F79_RS06675 WP_048539661.1 1343642..1346032(+) (recD2) [Mammaliicoccus sciuri strain PC04]
MENLSLFDLSHVKGEVIRILFQNSDNYYTVIKVDVMDSNEDFDQEVTIVGYLPQIVEGETYLFKGKVINHPKYGKQLQAE
TFEKELPQTKQGVIHYLSSDLFKGIGKKTAETIVDKLGEDALQKIIDDPDVLKEIPKLNKQKRDTIAESIRENQAIERIM
IKLNELGFGPKLAMAIYQFYKEETLNIIKQSPYRLVMDINGIGFQRADQIAEQVGISKDHHDRLVAGVSYFLDQQSLQNG
HTFLPVDILVNGAYELLNHNQPEVVNKDQINGVIIEMSEENKLIIENDNCFLPSLYYSEAKSVQIIHRLYQHQDELKEIE
KSDLQLHIGQIEDMNDVSYADGQKLALETAINHKMMLLTGGPGTGKTTVIRGICELYSEIHGVSLNYDDYQEGTDFPIVL
AAPTGRAAKRLSESTGLEAMTIHRLIGWSKDTQPDDVLDNDIHAHLIILDEMSMVDTWLMYQFLRAVPDYAQIIFVGDED
QLPSVGPGQIFKDLIDSKVIPRVNLTEVYRQQEGSSIIDLAHKIKNGLPVSINEKHHDRSFIPCSSNQIATVVEKVVQGA
VNKGYNMQDIQVLAPIYRGPAGINKLNELLQDILNPKDKDTRFLQYGDIEYRENDKVLQLINRPDDNVFNGDIGVVTGVY
KAEENALGKDVVIVDYEGNDITYTKQDLSEITHAYCCSIHKSQGSEFPIVIMPIVRQYFRMLQKNILYTGLTRAKQSLVV
CGEEQAFNQGIQTLGHERMTSFDTKLKMYFDTDVETDTESETETIQTKHIILTEDNMFEIDPMINMNDKSPYDFMK

Nucleotide


Download         Length: 2391 bp        

>NTDB_id=810839 P8F79_RS06675 WP_048539661.1 1343642..1346032(+) (recD2) [Mammaliicoccus sciuri strain PC04]
TTGGAAAACTTATCTTTATTTGATCTTTCACATGTTAAAGGTGAAGTTATTAGAATTCTTTTTCAAAACAGTGATAACTA
TTATACCGTTATTAAAGTCGATGTGATGGATTCAAATGAAGATTTTGATCAAGAAGTCACAATTGTTGGTTACTTACCTC
AAATAGTTGAAGGAGAAACGTACCTTTTCAAAGGTAAAGTGATAAACCATCCGAAATACGGTAAACAACTACAAGCCGAA
ACATTTGAAAAAGAATTACCACAAACAAAACAAGGTGTTATCCATTACTTATCGAGTGATTTATTTAAAGGTATTGGTAA
GAAAACAGCAGAAACAATCGTGGACAAACTAGGTGAAGATGCACTTCAGAAAATTATAGATGACCCAGATGTCCTTAAAG
AAATACCTAAACTCAACAAGCAAAAAAGAGATACGATTGCAGAATCAATACGTGAGAATCAAGCCATTGAACGTATTATG
ATTAAACTTAATGAACTTGGTTTCGGTCCGAAACTCGCGATGGCTATTTATCAATTTTATAAAGAAGAAACACTTAATAT
TATTAAACAATCTCCATATCGTTTGGTGATGGATATAAATGGTATAGGGTTTCAAAGAGCTGACCAAATAGCCGAACAAG
TTGGAATTTCAAAAGATCATCATGATCGACTTGTAGCGGGTGTCAGTTACTTTTTAGACCAGCAATCATTACAGAATGGC
CACACATTTTTACCTGTTGATATATTGGTTAACGGTGCATATGAATTGTTAAATCATAATCAACCTGAAGTTGTAAATAA
AGATCAGATTAATGGTGTCATTATAGAAATGAGTGAGGAAAATAAACTTATTATCGAAAATGATAATTGTTTTTTACCTT
CACTTTATTATTCAGAAGCGAAAAGTGTGCAAATCATTCATAGACTTTATCAACATCAAGATGAACTTAAAGAAATTGAG
AAAAGTGATCTTCAATTACATATTGGTCAAATTGAAGATATGAATGATGTTTCATATGCAGATGGACAAAAATTAGCGTT
AGAAACAGCCATTAATCATAAAATGATGCTTTTAACAGGTGGACCTGGAACAGGTAAGACAACAGTTATTCGAGGCATTT
GTGAGTTGTATTCTGAAATACATGGTGTGAGTTTAAATTATGATGATTATCAAGAAGGAACAGACTTTCCAATTGTATTA
GCAGCACCGACTGGTCGAGCAGCAAAACGTTTAAGTGAATCAACAGGACTAGAAGCGATGACGATTCATAGATTAATTGG
TTGGAGTAAAGATACGCAACCGGATGATGTGTTAGATAATGATATTCATGCCCATTTAATCATTCTAGATGAAATGTCTA
TGGTAGATACATGGTTAATGTATCAATTTTTAAGAGCAGTCCCTGACTATGCCCAAATCATATTTGTAGGTGACGAAGAT
CAATTACCATCAGTTGGTCCAGGTCAGATTTTTAAAGATTTAATTGATTCTAAAGTGATACCGAGAGTGAACTTAACAGA
AGTTTATAGACAACAAGAAGGATCATCCATCATAGATTTAGCGCATAAAATAAAAAATGGATTGCCTGTTTCTATCAATG
AAAAACATCACGACCGCTCATTTATTCCGTGCAGTAGTAATCAAATTGCGACAGTCGTAGAAAAGGTTGTACAAGGTGCG
GTTAATAAAGGGTATAATATGCAAGATATTCAAGTGCTAGCCCCAATATATCGTGGACCAGCTGGTATTAATAAATTGAA
TGAATTATTGCAAGATATATTAAATCCGAAAGATAAAGATACAAGATTTCTTCAATATGGAGATATTGAATATCGTGAAA
ATGATAAAGTACTTCAACTTATAAATCGTCCAGATGATAATGTATTTAATGGTGATATTGGTGTAGTAACAGGTGTTTAT
AAAGCAGAAGAAAATGCACTTGGTAAAGATGTTGTCATTGTGGATTATGAAGGGAATGACATAACATACACTAAACAAGA
TTTATCAGAAATTACACATGCTTATTGCTGTTCAATTCATAAATCACAAGGCTCGGAATTCCCAATAGTCATCATGCCTA
TCGTCAGACAATACTTTAGAATGTTACAAAAAAACATTCTATATACTGGACTAACACGTGCGAAACAGTCACTTGTCGTG
TGCGGTGAAGAGCAAGCCTTTAACCAAGGTATCCAAACACTAGGTCATGAGAGAATGACATCGTTTGATACGAAATTAAA
AATGTATTTCGATACTGATGTTGAAACGGATACTGAGTCTGAAACAGAAACTATACAAACGAAACATATTATTTTAACTG
AAGATAATATGTTTGAAATTGATCCGATGATTAATATGAATGATAAATCGCCATATGATTTTATGAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(152-243)

AAA domain (AAA_30)

(339-545)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(586-644)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(673-721)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.502

100

0.5