Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   P8F82_RS06275 Genome accession   NZ_CP121162
Coordinates   1344855..1347242 (+) Length   795 a.a.
NCBI ID   WP_038678681.1    Uniprot ID   -
Organism   Staphylococcus xylosus strain PC20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1339855..1352242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8F82_RS06255 (P8F82_06255) sal 1340100..1341731 (+) 1632 WP_080706846.1 Sal family ABC-F type ribosomal protection protein -
  P8F82_RS06260 (P8F82_06260) - 1341792..1342937 (+) 1146 WP_042362571.1 cysteine desulfurase family protein -
  P8F82_RS06265 (P8F82_06265) mnmA 1342938..1344050 (+) 1113 WP_042362572.1 tRNA 2-thiouridine(34) synthase MnmA -
  P8F82_RS06270 (P8F82_06270) - 1344183..1344851 (+) 669 WP_042362573.1 tetratricopeptide repeat protein -
  P8F82_RS06275 (P8F82_06275) recD2 1344855..1347242 (+) 2388 WP_038678681.1 ATP-dependent RecD-like DNA helicase Machinery gene
  P8F82_RS06280 (P8F82_06280) alaS 1347591..1350221 (+) 2631 WP_042362575.1 alanine--tRNA ligase -
  P8F82_RS06285 (P8F82_06285) - 1350290..1350550 (+) 261 WP_029377131.1 IreB family regulatory phosphoprotein -
  P8F82_RS06290 (P8F82_06290) ruvX 1350554..1350982 (+) 429 WP_042362576.1 Holliday junction resolvase RuvX -
  P8F82_RS06295 (P8F82_06295) - 1350999..1351331 (+) 333 WP_029377133.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 795 a.a.        Molecular weight: 89573.10 Da        Isoelectric Point: 4.5117

>NTDB_id=810743 P8F82_RS06275 WP_038678681.1 1344855..1347242(+) (recD2) [Staphylococcus xylosus strain PC20]
MENPTLFNNSMIKGTVDAILFQNKENFYTVLKVDTIESNETFDSMPTIVGFFPDIAEGDVYTFKGQVVTHAKYGKQLKAE
TFEKELPQTKEAIISYLSSDLFKGIGKKTAQSIVNKLGENAISDILNDPTILEKVPSLPKKKQKQIAEQIASNQETEQII
IRLHDLGFGPKLAMAIYQAYLGETLNVVEKKPYQLVYDVKGIGFNKADTLARNVGIQFNDAERLKAGLLYVLEEECIKQG
HTYLPTNNVLEMTQDMLSQPPGELIETQQLEQVLQDLVNDTKLIQQENEVAIPSLYYSELKSVQNLYRNFSYTNKLKEIE
QSDLLLEIGEIEERNKVTYADSQREALQTAINSKIMLLTGGPGTGKTTVIKGIVELYAELHGLSLDYDDYQNDDYPVVLG
APTGRASKRLSESTGLEAMTIHRLIGWNQDTQPEDILDNEISAKLIIIDEMSMVDTWLFHQFLSAVPIDAQVILVGDEDQ
LPSVGPGQVFKDLIDSKVIPRVNLTEVYRQQDGSSIIELAHRMKLGETIDITQRFHDRNFINCTTEQIPSVVEKVVSSAV
NKGYDMSDIQVLAPMYKGSAGIKKLNTVLQDILNPKEQDTREIEFGDIVFRKGDKVLQLVNRPSDNIFNGDIGVIVGIFW
AKENALNKDVLVVDFEGNEITFVRQDLMELTHAYCTSIHKSQGSEFPIVIMPMVKQYFRMLQKPILYTGLTRAKQSLVFL
GDPQAFDIGLKTHGQVRMTQLCAFLKAYFNNEEETETADVSKSFDSDIILSEENIFKINPMINMGEFSPYDFVED

Nucleotide


Download         Length: 2388 bp        

>NTDB_id=810743 P8F82_RS06275 WP_038678681.1 1344855..1347242(+) (recD2) [Staphylococcus xylosus strain PC20]
ATGGAAAACCCTACACTATTTAACAATTCAATGATTAAAGGGACCGTTGATGCGATTTTGTTTCAAAACAAAGAGAATTT
TTATACGGTTTTAAAAGTTGATACGATTGAATCCAATGAGACATTTGATTCAATGCCTACAATTGTAGGGTTTTTCCCAG
ATATTGCAGAAGGTGACGTCTATACATTTAAAGGCCAAGTAGTTACGCATGCAAAATATGGCAAACAATTAAAGGCTGAA
ACATTTGAAAAAGAGTTACCACAAACGAAAGAAGCAATTATAAGTTATTTATCTAGTGATCTTTTTAAAGGAATAGGTAA
AAAAACAGCTCAAAGTATTGTAAATAAATTAGGTGAAAATGCAATTAGCGACATATTAAATGATCCAACTATATTAGAAA
AAGTACCTAGTTTACCTAAAAAGAAACAAAAACAAATTGCTGAACAAATCGCAAGTAATCAAGAAACGGAACAAATTATC
ATTCGCCTCCATGATCTAGGTTTTGGGCCAAAGTTAGCAATGGCTATATACCAAGCATATTTAGGAGAAACACTTAACGT
AGTTGAAAAGAAACCTTATCAACTTGTATATGATGTCAAAGGCATCGGTTTTAATAAGGCAGACACATTAGCGCGTAATG
TCGGCATTCAATTTAACGATGCAGAACGTCTTAAAGCAGGGTTACTTTATGTGTTAGAAGAAGAATGTATAAAACAAGGT
CATACGTATTTACCTACGAATAATGTACTAGAGATGACTCAAGATATGCTATCACAACCACCAGGTGAATTAATAGAAAC
ACAGCAGTTGGAGCAAGTTTTACAAGATTTAGTTAATGACACTAAATTAATTCAACAAGAAAATGAAGTTGCGATTCCAA
GTCTATACTATTCAGAATTGAAAAGCGTTCAAAATTTATACCGTAATTTTTCTTATACAAATAAACTAAAAGAAATTGAG
CAATCTGATTTGCTGCTTGAAATAGGAGAAATTGAGGAACGCAATAAAGTGACATATGCAGATTCTCAAAGAGAAGCCTT
GCAAACAGCGATTAACTCTAAAATAATGTTACTGACTGGTGGCCCAGGTACAGGAAAAACAACTGTCATTAAAGGAATTG
TTGAACTTTATGCAGAGTTGCATGGTCTATCATTAGATTATGACGATTATCAAAATGATGATTATCCAGTAGTTCTAGGT
GCGCCAACTGGACGTGCATCGAAGCGTTTGTCAGAGTCAACTGGTTTAGAGGCTATGACGATACATCGCTTAATAGGTTG
GAATCAAGATACACAACCAGAAGATATTTTAGATAATGAAATTTCTGCAAAACTTATTATTATTGATGAAATGTCTATGG
TTGATACATGGTTATTCCATCAATTTTTGAGTGCTGTACCTATTGATGCGCAAGTTATACTAGTCGGTGATGAAGATCAG
CTGCCATCTGTTGGACCAGGCCAAGTATTTAAAGATTTAATTGATTCGAAAGTAATTCCTCGTGTAAATTTAACTGAAGT
TTACCGACAACAAGATGGTTCAAGTATTATTGAATTAGCGCATAGGATGAAACTAGGAGAAACTATTGATATTACACAGA
GATTTCATGACCGTAATTTTATAAACTGTACAACAGAACAGATACCTTCAGTTGTTGAAAAAGTGGTGTCAAGTGCAGTG
AATAAAGGTTATGATATGAGTGATATTCAAGTATTAGCTCCGATGTATAAAGGATCTGCAGGTATTAAGAAACTAAATAC
AGTATTGCAAGATATCTTGAATCCCAAAGAACAAGATACTAGAGAAATTGAGTTTGGTGATATTGTCTTTAGAAAAGGTG
ATAAGGTATTACAACTAGTTAACCGACCAAGCGATAATATATTTAATGGTGATATCGGGGTCATTGTAGGCATCTTCTGG
GCTAAAGAAAATGCATTAAACAAAGATGTATTGGTAGTTGATTTTGAAGGTAATGAGATTACATTTGTTCGTCAAGACTT
AATGGAGTTGACGCATGCCTATTGTACTTCAATCCATAAGTCACAAGGATCAGAATTTCCGATTGTGATTATGCCAATGG
TTAAACAGTACTTTAGAATGCTTCAAAAACCTATTTTATATACAGGTTTAACACGTGCTAAACAGTCACTTGTGTTCTTA
GGAGATCCACAAGCATTTGATATTGGTCTAAAGACTCACGGCCAAGTGAGAATGACACAATTGTGTGCTTTTCTTAAAGC
GTATTTTAATAATGAGGAAGAAACTGAAACTGCTGATGTCAGTAAATCCTTTGATTCAGATATTATATTATCTGAAGAAA
ATATATTTAAAATAAATCCAATGATTAATATGGGTGAATTTTCCCCGTATGACTTCGTTGAAGATTGA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-719)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

AAA domain (AAA_30)

(339-545)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50.126

99.874

0.501