Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   P8F80_RS08850 Genome accession   NZ_CP121161
Coordinates   1757526..1758362 (-) Length   278 a.a.
NCBI ID   WP_326516167.1    Uniprot ID   -
Organism   Ligilactobacillus murinus strain PC39     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1752526..1763362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8F80_RS08820 (P8F80_08820) - 1752667..1753272 (-) 606 WP_172477701.1 response regulator transcription factor -
  P8F80_RS08825 (P8F80_08825) - 1753250..1754386 (-) 1137 WP_326516166.1 sensor histidine kinase -
  P8F80_RS08830 (P8F80_08830) - 1754388..1755107 (-) 720 WP_004049317.1 ABC transporter permease -
  P8F80_RS08835 (P8F80_08835) - 1755091..1755981 (-) 891 WP_004049319.1 ABC transporter ATP-binding protein -
  P8F80_RS08840 (P8F80_08840) - 1756113..1756988 (-) 876 WP_257577382.1 CPBP family intramembrane glutamic endopeptidase -
  P8F80_RS08845 (P8F80_08845) - 1757215..1757526 (-) 312 WP_004049323.1 hypothetical protein -
  P8F80_RS08850 (P8F80_08850) endA 1757526..1758362 (-) 837 WP_326516167.1 DNA/RNA non-specific endonuclease Machinery gene
  P8F80_RS08855 (P8F80_08855) asnA 1758422..1759429 (-) 1008 WP_172477695.1 aspartate--ammonia ligase -
  P8F80_RS08860 (P8F80_08860) - 1759610..1760257 (+) 648 WP_004049330.1 nitroreductase -
  P8F80_RS08865 (P8F80_08865) - 1760426..1760851 (-) 426 WP_326516168.1 N-acetyltransferase -
  P8F80_RS08870 (P8F80_08870) - 1760919..1761305 (+) 387 WP_004049334.1 iron chaperone -

Sequence

Protein


Download         Length: 278 a.a.        Molecular weight: 30323.99 Da        Isoelectric Point: 10.5647

>NTDB_id=810723 P8F80_RS08850 WP_326516167.1 1757526..1758362(-) (endA) [Ligilactobacillus murinus strain PC39]
MKFKKILTGFVAALMLSGAIGASVTAKATTHYGGWRTHQKNSSSGSGELKKSTPSQQLAQTVLTPDVVKQLGGEQNLKWN
NSGAFIVNNNKTGLKAKVSSAPYATNEVDSLKRPTVANALLNRTTRQYKNRHQTNNGSTKWKPQGFKQLTNLSGAYNHAY
DRGHLLGYALVGNIRGFDASESNPKNIATQTAWANEANAKYSTGQNYYESLVRKALDRNKTVRYRVTNVYSGNNLVPSGA
HLEAKASDGSLEYNVFIPNVQKGLKIDYATGHAIKENN

Nucleotide


Download         Length: 837 bp        

>NTDB_id=810723 P8F80_RS08850 WP_326516167.1 1757526..1758362(-) (endA) [Ligilactobacillus murinus strain PC39]
ATGAAGTTCAAAAAAATATTGACCGGATTTGTGGCAGCTTTGATGCTCAGTGGTGCGATCGGGGCATCGGTAACAGCTAA
AGCAACGACGCACTATGGTGGTTGGCGCACACATCAAAAAAATAGTTCGAGTGGCTCTGGTGAATTAAAAAAGAGCACTC
CATCACAACAATTAGCCCAAACGGTTTTGACGCCGGATGTTGTTAAACAATTAGGCGGTGAGCAAAATCTCAAATGGAAC
AACAGTGGGGCTTTTATCGTTAATAACAACAAGACAGGTTTAAAAGCTAAGGTTTCTAGTGCTCCTTATGCAACAAATGA
AGTCGATAGCTTAAAACGTCCGACGGTAGCCAATGCCCTTTTGAATAGGACAACACGGCAATATAAGAATCGCCACCAAA
CTAATAATGGTTCGACTAAATGGAAACCACAGGGCTTTAAGCAACTCACTAACTTAAGTGGCGCCTACAACCATGCTTAT
GATCGCGGACACTTACTAGGGTATGCTTTAGTGGGAAATATTCGTGGTTTTGATGCTAGTGAGAGCAATCCCAAAAATAT
TGCTACTCAGACAGCTTGGGCTAATGAAGCTAATGCAAAATATTCAACAGGTCAAAACTATTACGAAAGTCTTGTTCGAA
AAGCCTTAGATCGTAATAAGACTGTCCGTTATCGTGTGACAAATGTCTATAGCGGTAATAATTTAGTACCATCAGGCGCT
CATTTAGAAGCTAAAGCAAGTGATGGTTCGTTAGAGTATAATGTTTTTATCCCTAATGTTCAAAAGGGATTAAAGATCGA
CTATGCTACTGGTCATGCGATAAAGGAGAACAACTGA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(82-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

65.471

80.216

0.525
  endA Streptococcus pneumoniae D39

65.471

80.216

0.525
  endA Streptococcus pneumoniae R6

65.471

80.216

0.525
  endA Streptococcus pneumoniae TIGR4

65.471

80.216

0.525