Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   P8R98_RS11660 Genome accession   NZ_CP121159
Coordinates   2350148..2351080 (-) Length   310 a.a.
NCBI ID   WP_000138507.1    Uniprot ID   A0AAD3A4P4
Organism   Streptococcus agalactiae strain S1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2345148..2356080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8R98_RS11660 amiF 2350148..2351080 (-) 933 WP_000138507.1 ATP-binding cassette domain-containing protein Regulator
  P8R98_RS11665 oppD 2351080..2352126 (-) 1047 WP_000410290.1 ABC transporter ATP-binding protein Regulator
  P8R98_RS11670 - 2352139..2353170 (-) 1032 WP_000764052.1 ABC transporter permease -
  P8R98_RS11675 - 2353180..2354094 (-) 915 WP_000598965.1 ABC transporter permease -
  P8R98_RS11680 - 2354213..2355868 (-) 1656 WP_017643615.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 310 a.a.        Molecular weight: 34845.63 Da        Isoelectric Point: 6.7314

>NTDB_id=810644 P8R98_RS11660 WP_000138507.1 2350148..2351080(-) (amiF) [Streptococcus agalactiae strain S1]
MTENRKKLVEVKNVSLTFNKGKANEVRAIDNVSFDIYEGEVFGLVGESGSGKTTVGRSILKLYDISDGEITFNGEVISHL
KGKALHSFRKDAQMIFQDPQASLNGRMKIRDIVAEGLDIHKLAKSKSDRDSKVQALLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVEPKFIIADEPISALDVSIQAQVVNLMQKLQREQGLTYLFIAHDLSMVKYISDRIGVMHWGKLLEVGTSDD
VYNNPIHPYTKSLLSAIPEPDPESERQRVHQPYNPAIEQDGQERQMHEITPGHFVLSTSQEAEEYKKQIL

Nucleotide


Download         Length: 933 bp        

>NTDB_id=810644 P8R98_RS11660 WP_000138507.1 2350148..2351080(-) (amiF) [Streptococcus agalactiae strain S1]
ATGACTGAAAATCGAAAAAAATTAGTTGAAGTCAAAAATGTTTCTTTGACCTTCAATAAAGGAAAAGCTAATGAAGTGAG
AGCAATTGATAATGTTAGTTTTGACATTTATGAAGGTGAAGTGTTTGGATTAGTTGGGGAATCTGGATCAGGAAAGACAA
CCGTTGGACGTTCAATTTTAAAACTTTATGATATTTCTGATGGAGAAATTACCTTTAATGGAGAAGTGATCTCACATCTG
AAAGGTAAAGCATTACATAGTTTTCGTAAAGACGCTCAGATGATTTTTCAGGATCCTCAGGCTAGCTTAAACGGCCGTAT
GAAGATTCGTGATATCGTAGCAGAAGGTTTAGACATACATAAATTAGCTAAATCAAAATCAGATCGTGATAGTAAAGTTC
AGGCCCTATTAGATCTTGTAGGGTTAAATAAAGATCATTTAACACGTTATCCGCATGAATTTTCAGGTGGACAACGACAA
CGTATCGGGATTGCACGTGCTTTAGCAGTAGAGCCTAAATTTATCATTGCTGATGAACCAATATCTGCCTTAGATGTTTC
AATCCAAGCACAAGTTGTTAATTTAATGCAAAAATTGCAAAGAGAACAAGGATTGACTTATTTGTTTATCGCACATGATT
TGTCTATGGTAAAATACATTTCAGATCGTATCGGTGTTATGCATTGGGGGAAACTGTTAGAAGTTGGTACATCTGATGAT
GTTTATAACAATCCAATCCACCCTTATACGAAGAGTCTATTATCAGCTATTCCAGAACCAGATCCGGAGAGTGAACGTCA
ACGTGTTCACCAGCCGTATAATCCAGCTATTGAGCAAGACGGACAAGAACGTCAAATGCACGAGATTACACCTGGTCATT
TTGTTTTATCTACATCCCAAGAAGCTGAAGAATATAAAAAACAAATATTATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-267)

ABC transporter (ABC_tran)

(30-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

54.545

99.355

0.542
  amiF Streptococcus thermophilus LMG 18311

54.221

99.355

0.539
  amiF Streptococcus salivarius strain HSISS4

54.426

98.387

0.535