Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   RQ468_RS27760 Genome accession   NZ_CP135175
Coordinates   5975037..5975633 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain PARM_Z1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5970037..5980633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RQ468_RS27740 (RQ468_27740) aroK 5971168..5971686 (-) 519 WP_003095833.1 shikimate kinase AroK -
  RQ468_RS27745 (RQ468_27745) pilQ 5971698..5973842 (-) 2145 WP_003103267.1 type 4a pilus secretin PilQ Machinery gene
  RQ468_RS27750 (RQ468_27750) comL/pilP 5973896..5974420 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  RQ468_RS27755 (RQ468_27755) pilO 5974417..5975040 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  RQ468_RS27760 (RQ468_27760) pilN 5975037..5975633 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  RQ468_RS27765 (RQ468_27765) pilM 5975633..5976697 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  RQ468_RS27770 (RQ468_27770) - 5976882..5979353 (+) 2472 WP_003103276.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=810498 RQ468_RS27760 WP_003095839.1 5975037..5975633(-) (pilN) [Pseudomonas aeruginosa strain PARM_Z1]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=810498 RQ468_RS27760 WP_003095839.1 5975037..5975633(-) (pilN) [Pseudomonas aeruginosa strain PARM_Z1]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369