Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   RQ468_RS02505 Genome accession   NZ_CP135175
Coordinates   549991..550716 (-) Length   241 a.a.
NCBI ID   WP_003103309.1    Uniprot ID   Q9I629
Organism   Pseudomonas aeruginosa strain PARM_Z1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 544991..555716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RQ468_RS02480 (RQ468_02480) - 545463..545978 (+) 516 WP_003084789.1 glycine cleavage system protein R -
  RQ468_RS02485 (RQ468_02485) rarD 546668..547564 (-) 897 WP_003121788.1 EamA family transporter RarD -
  RQ468_RS02490 (RQ468_02490) - 547767..548741 (-) 975 WP_003103303.1 serine/threonine protein kinase -
  RQ468_RS02495 (RQ468_02495) - 548803..549561 (-) 759 WP_003103305.1 TOBE domain-containing protein -
  RQ468_RS02500 (RQ468_02500) - 549629..549949 (-) 321 WP_003103307.1 YfiM family lipoprotein -
  RQ468_RS02505 (RQ468_02505) comF 549991..550716 (-) 726 WP_003103309.1 ComF family protein Machinery gene
  RQ468_RS02510 (RQ468_02510) - 550855..551148 (-) 294 WP_003113255.1 hypothetical protein -
  RQ468_RS02515 (RQ468_02515) - 551202..552127 (-) 926 Protein_502 LysR family transcriptional regulator -
  RQ468_RS02520 (RQ468_02520) - 552245..553003 (+) 759 WP_003111232.1 5-oxoprolinase subunit PxpA -
  RQ468_RS02525 (RQ468_02525) - 553080..553328 (+) 249 WP_003084813.1 acetyl-CoA carboxylase -
  RQ468_RS02530 (RQ468_02530) - 553339..554715 (+) 1377 WP_003113254.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  RQ468_RS02535 (RQ468_02535) - 554717..555595 (+) 879 WP_033867682.1 5-oxoprolinase subunit B family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27088.60 Da        Isoelectric Point: 11.2212

>NTDB_id=810428 RQ468_RS02505 WP_003103309.1 549991..550716(-) (comF) [Pseudomonas aeruginosa strain PARM_Z1]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAERLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=810428 RQ468_RS02505 WP_003103309.1 549991..550716(-) (comF) [Pseudomonas aeruginosa strain PARM_Z1]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCTCGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTGGACCTGCGCTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGACTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGCGCCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9I629

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.174

100

0.382