Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   RQ453_RS16225 Genome accession   NZ_CP135173
Coordinates   3477061..3477486 (-) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain CP-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3472061..3482486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RQ453_RS16205 (RQ453_16205) ileS 3472218..3475049 (+) 2832 WP_023092936.1 isoleucine--tRNA ligase -
  RQ453_RS16210 (RQ453_16210) lspA 3475042..3475551 (+) 510 WP_003094728.1 signal peptidase II -
  RQ453_RS16215 (RQ453_16215) fkpB 3475544..3475984 (+) 441 WP_003094726.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  RQ453_RS16220 (RQ453_16220) ispH 3476070..3477014 (+) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RQ453_RS16225 (RQ453_16225) comF 3477061..3477486 (-) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  RQ453_RS16230 (RQ453_16230) pilY2 3477483..3477830 (-) 348 WP_023098087.1 type 4a fimbrial biogenesis protein PilY2 -
  RQ453_RS16235 (RQ453_16235) pilY1 3477832..3481317 (-) 3486 WP_003134937.1 type 4a pilus biogenesis protein PilY1 -
  RQ453_RS16240 (RQ453_16240) pilX 3481329..3481916 (-) 588 WP_003094700.1 type 4a pilus minor pilin PilX -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=810272 RQ453_RS16225 WP_003094721.1 3477061..3477486(-) (comF) [Pseudomonas aeruginosa strain CP-1]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=810272 RQ453_RS16225 WP_003094721.1 3477061..3477486(-) (comF) [Pseudomonas aeruginosa strain CP-1]
ATGAGGACAAGACAGAAGGGCTTCACGCTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCTGGGGTCGGCTACACCAAGGACGTGGCCAAACTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACGCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383