Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   QN339_RS09450 Genome accession   NZ_CP135104
Coordinates   1877854..1879122 (+) Length   422 a.a.
NCBI ID   WP_000774765.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain MA15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1872854..1884122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN339_RS09410 (QN339_09400) prmA 1873251..1874204 (-) 954 WP_001099301.1 50S ribosomal protein L11 methyltransferase -
  QN339_RS09415 (QN339_09405) - 1874201..1874665 (-) 465 WP_306425667.1 MepB family protein -
  QN339_RS09420 (QN339_09410) - 1874783..1875499 (+) 717 WP_395083008.1 MerR family transcriptional regulator -
  QN339_RS09425 (QN339_09415) - 1875538..1876008 (-) 471 WP_000631754.1 GNAT family N-acetyltransferase -
  QN339_RS09430 (QN339_09420) - 1875980..1876438 (-) 459 WP_000376720.1 NUDIX hydrolase -
  QN339_RS09435 - 1876431..1876568 (-) 138 Protein_1820 RNA-binding protein -
  QN339_RS09440 (QN339_09425) - 1876574..1877044 (-) 471 WP_001051348.1 DUF3013 family protein -
  QN339_RS09445 (QN339_09430) - 1877370..1877861 (+) 492 WP_000586892.1 GNAT family N-acetyltransferase -
  QN339_RS09450 (QN339_09435) rarA 1877854..1879122 (+) 1269 WP_000774765.1 replication-associated recombination protein A Machinery gene
  QN339_RS09460 (QN339_09445) - 1879577..1880698 (-) 1122 WP_000257253.1 site-specific integrase -
  QN339_RS09465 (QN339_09450) - 1880748..1881074 (-) 327 WP_001188028.1 DUF771 domain-containing protein -
  QN339_RS09470 (QN339_09455) - 1881275..1882441 (-) 1167 WP_000282289.1 XRE family transcriptional regulator -
  QN339_RS09475 (QN339_09460) - 1882462..1883169 (-) 708 WP_000418710.1 hypothetical protein -
  QN339_RS09480 (QN339_09465) - 1883295..1884074 (-) 780 WP_000048875.1 LPXTG cell wall anchor domain-containing protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46611.03 Da        Isoelectric Point: 6.6718

>NTDB_id=810080 QN339_RS09450 WP_000774765.1 1877854..1879122(+) (rarA) [Streptococcus agalactiae strain MA15]
MADNLALRMRPRNINEVIGQQHLVGNGKIIDRMVAANMLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKKAIQ
LAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDGSRHISLETMENSLQRSYITMDKNGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPEAQIHTVTALEAAQRIGFPEARILIANIV
VDLALSPKSNSAYLAMNAALADLRRSGNLPIPRHLRDGHYSGSKTLGNARDYKYPHAYPEKWVKQQYLPDKLVGHNYFEA
NETGKYERALGSNKERIDKLSD

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=810080 QN339_RS09450 WP_000774765.1 1877854..1879122(+) (rarA) [Streptococcus agalactiae strain MA15]
ATGGCTGACAATCTTGCTCTACGTATGCGTCCTCGCAATATTAATGAAGTTATCGGGCAGCAACATCTCGTTGGTAATGG
CAAAATTATTGATCGAATGGTTGCAGCTAATATGTTATCTTCCATGATCCTATATGGCCCACCAGGTATTGGGAAGACTT
CTATTGCTTCTGCTATTGCTGGTACTACTAAATATGCCTTTCGTACTTTTAATGCCACTGTTGATAGTAAAAAACGTCTT
CAAGAAATTGCAGAAGAAGCTAAATTTTCTGGTGGCTTAGTTTTATTACTTGACGAGATTCATAGACTTGACAAGACAAA
ACAAGATTTTCTTTTACCTTTACTTGAGAATGGCAATATTATTATGATTGGAGCAACAACTGAAAATCCTTTCTTTTCAG
TAACTCCTGCCATTAGAAGTAGGGTACAAATTTTTGAGTTAGAACCTCTTTCTAACGAGGATATTAAAAAAGCCATTCAG
CTAGCAATTTCCGATAAAGAACGGGGATTTCCTTTTTTAGTGACAATTGATGATGAGGCGCTAGATTTCATTGTTACCGC
CACAAATGGAGACCTACGATCTGCTTATAATTCCTTGGATCTAGCAGTCATGTCTACTTCTCCTAATGAAGATGGTAGCC
GTCATATTAGTCTAGAGACAATGGAAAATAGTCTGCAGCGTAGTTATATTACAATGGATAAAAACGGAGATGGGCATTAT
GATGTCCTATCAGCCTTACAAAAATCAATTAGAGGTTCTGATGTCAATGCCAGCCTGCACTATGCCGCTCGTTTAGTAGA
AGCTGGAGATTTACCTAGTTTAGCAAGACGTTTGACCATTATTGCTTATGAAGATATCGGCTTAGCTAACCCCGAAGCAC
AAATACATACTGTGACTGCATTGGAAGCTGCCCAACGCATTGGTTTTCCAGAAGCTCGTATTCTTATTGCTAACATTGTT
GTGGATTTAGCTCTATCACCTAAATCAAATTCAGCCTATTTGGCTATGAATGCAGCCTTAGCTGATTTACGTCGTTCAGG
AAATTTACCTATTCCACGTCACCTAAGAGATGGACATTACAGCGGTAGTAAAACCTTGGGCAATGCAAGGGATTACAAGT
ACCCTCACGCCTATCCTGAAAAATGGGTTAAACAACAATACTTACCAGATAAACTAGTAGGACATAATTATTTTGAAGCC
AATGAAACTGGTAAATACGAACGCGCACTTGGTTCAAATAAAGAGCGCATTGATAAGCTCTCAGACTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(174-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.472

98.815

0.588