Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   QN328_RS09040 Genome accession   NZ_CP135102
Coordinates   1793231..1794499 (+) Length   422 a.a.
NCBI ID   WP_410530946.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain HU32/21     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1788231..1799499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN328_RS08995 (QN328_08975) - 1788370..1788834 (-) 465 WP_306341185.1 MepB family protein -
  QN328_RS09000 (QN328_08980) - 1788952..1789668 (+) 717 WP_000859572.1 MerR family transcriptional regulator -
  QN328_RS09005 (QN328_08985) - 1789707..1790177 (-) 471 WP_000631751.1 GNAT family N-acetyltransferase -
  QN328_RS09010 (QN328_08990) - 1790149..1790607 (-) 459 WP_000350744.1 NUDIX hydrolase -
  QN328_RS09015 (QN328_08995) - 1790594..1790908 (-) 315 WP_410530944.1 RNA-binding protein -
  QN328_RS09020 (QN328_09000) - 1790951..1791421 (-) 471 WP_410530945.1 DUF3013 family protein -
  QN328_RS09025 (QN328_09005) - 1791495..1792022 (-) 528 WP_001031089.1 DUF3278 domain-containing protein -
  QN328_RS09030 (QN328_09010) - 1792025..1792213 (-) 189 WP_001082463.1 helix-turn-helix transcriptional regulator -
  QN328_RS09035 (QN328_09015) - 1792747..1793238 (+) 492 WP_000586891.1 GNAT family N-acetyltransferase -
  QN328_RS09040 (QN328_09020) rarA 1793231..1794499 (+) 1269 WP_410530946.1 replication-associated recombination protein A Machinery gene
  QN328_RS09050 (QN328_09030) - 1794953..1796074 (-) 1122 WP_161512907.1 tyrosine-type recombinase/integrase -
  QN328_RS09055 (QN328_09035) - 1796124..1796450 (-) 327 WP_161512906.1 DUF771 domain-containing protein -
  QN328_RS09060 (QN328_09040) - 1796549..1796809 (-) 261 WP_336317314.1 hypothetical protein -
  QN328_RS09065 (QN328_09045) - 1796890..1797150 (-) 261 WP_410530947.1 hypothetical protein -
  QN328_RS09070 (QN328_09050) - 1797284..1798507 (-) 1224 Protein_1746 phage tail tip lysozyme -
  QN328_RS09075 (QN328_09055) - 1798513..1799247 (-) 735 WP_161512903.1 LPXTG cell wall anchor domain-containing protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46603.02 Da        Isoelectric Point: 6.3530

>NTDB_id=809877 QN328_RS09040 WP_410530946.1 1793231..1794499(+) (rarA) [Streptococcus agalactiae strain HU32/21]
MADNLALRMRPRNINEVIGQQHLVGNGKIIDRMVATNMLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKKAIQ
LAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDGSRHISLETMENSLQCSYITMDKNGDGHY
DILSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPEAQIHTVTALEAAQRIGFPEARILIANIV
VDLALSPKSNSAYLAMDAALADLRRSGNLPIPRHLRDGHYSGSKTLGNARDYKYPHAYPEKWVKQQYLPDKLVGHNYFEA
NETGKYERALGSNKERIDKLSD

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=809877 QN328_RS09040 WP_410530946.1 1793231..1794499(+) (rarA) [Streptococcus agalactiae strain HU32/21]
ATGGCTGACAATCTTGCTCTACGTATGCGTCCTCGCAATATTAATGAAGTTATCGGGCAGCAACATCTCGTTGGTAATGG
CAAAATTATTGATCGAATGGTTGCAACTAATATGTTATCTTCCATGATCCTATATGGCCCACCAGGTATTGGGAAGACTT
CTATTGCTTCTGCTATTGCTGGTACTACTAAATATGCCTTTCGTACTTTTAATGCCACTGTTGATAGTAAAAAACGTCTT
CAAGAAATTGCAGAAGAAGCTAAATTTTCTGGTGGCTTAGTTTTATTACTTGACGAGATTCATAGACTTGACAAGACAAA
ACAAGATTTTCTTTTACCTCTACTTGAGAATGGCAATATTATTATGATTGGAGCAACAACTGAAAATCCTTTCTTTTCAG
TAACTCCTGCCATTAGAAGTAGGGTACAAATTTTTGAGTTAGAACCTCTTTCTAACGAGGATATTAAAAAAGCCATTCAG
CTAGCAATTTCCGATAAAGAACGGGGATTTCCTTTTTTAGTGACAATTGATGATGAGGCGCTAGATTTTATTGTTACCGC
CACAAATGGAGACCTACGATCTGCTTATAATTCCTTGGATCTAGCAGTCATGTCTACTTCTCCTAATGAAGATGGTAGCC
GTCATATTAGTCTAGAGACAATGGAAAATAGTCTGCAGTGTAGTTATATTACAATGGATAAAAACGGAGATGGGCATTAT
GATATCCTATCAGCCTTACAAAAATCAATTAGAGGTTCTGATGTCAATGCCAGCCTGCACTATGCCGCTCGTTTAGTAGA
AGCCGGAGATTTACCTAGTTTAGCAAGACGTTTGACCATTATTGCTTATGAAGATATCGGCTTAGCTAACCCCGAAGCAC
AAATACATACTGTGACTGCATTGGAAGCTGCCCAACGCATTGGTTTTCCAGAAGCTCGTATTCTTATTGCTAACATTGTT
GTGGATTTAGCTCTATCACCTAAATCAAATTCAGCCTATTTGGCTATGGATGCAGCTTTAGCTGATTTACGTCGTTCAGG
AAATTTACCTATTCCACGTCACCTAAGAGATGGACATTACAGCGGTAGTAAAACCTTGGGCAATGCAAGGGATTACAAGT
ACCCTCACGCCTATCCTGAAAAATGGGTTAAACAACAATACTTACCAGATAAACTAGTAGGACATAATTACTTTGAAGCC
AATGAAACTGGTAAATACGAACGCGCACTTGGTTCAAATAAAGAGCGCATTGATAAGCTCTCAGACTGA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)

AAA C-terminal domain (AAA_assoc_2)

(174-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.233

98.815

0.585