Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   QN325_RS03195 Genome accession   NZ_CP135101
Coordinates   577598..578866 (-) Length   422 a.a.
NCBI ID   WP_000774765.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain HU13/21     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 572598..583866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN325_RS03165 (QN325_03155) - 572848..573582 (+) 735 WP_161512903.1 LPXTG cell wall anchor domain-containing protein -
  QN325_RS03170 (QN325_03160) - 573588..574811 (+) 1224 Protein_550 phage tail tip lysozyme -
  QN325_RS03175 (QN325_03165) - 574945..575547 (+) 603 WP_161512905.1 hypothetical protein -
  QN325_RS03180 (QN325_03170) - 575646..575972 (+) 327 WP_161512906.1 DUF771 domain-containing protein -
  QN325_RS03185 (QN325_03175) - 576022..577143 (+) 1122 WP_161512907.1 tyrosine-type recombinase/integrase -
  QN325_RS03195 (QN325_03185) rarA 577598..578866 (-) 1269 WP_000774765.1 replication-associated recombination protein A Machinery gene
  QN325_RS03200 (QN325_03190) - 578859..579350 (-) 492 WP_000586892.1 GNAT family N-acetyltransferase -
  QN325_RS03205 (QN325_03195) - 579884..580072 (+) 189 WP_001082462.1 helix-turn-helix transcriptional regulator -
  QN325_RS03210 (QN325_03200) - 580075..580602 (+) 528 WP_001031199.1 DUF3278 domain-containing protein -
  QN325_RS03215 (QN325_03205) - 580676..581146 (+) 471 WP_410530756.1 DUF3013 family protein -
  QN325_RS03220 (QN325_03210) - 581189..581497 (+) 309 WP_001868493.1 hypothetical protein -
  QN325_RS03225 (QN325_03215) - 581490..581948 (+) 459 WP_000376720.1 NUDIX hydrolase -
  QN325_RS03230 (QN325_03220) - 581920..582390 (+) 471 WP_000631754.1 GNAT family N-acetyltransferase -
  QN325_RS03235 (QN325_03225) - 582429..583145 (-) 717 WP_395083008.1 MerR family transcriptional regulator -
  QN325_RS03240 (QN325_03230) - 583275..583727 (+) 453 WP_223297785.1 MepB family protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46611.03 Da        Isoelectric Point: 6.6718

>NTDB_id=809719 QN325_RS03195 WP_000774765.1 577598..578866(-) (rarA) [Streptococcus agalactiae strain HU13/21]
MADNLALRMRPRNINEVIGQQHLVGNGKIIDRMVAANMLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKKAIQ
LAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDGSRHISLETMENSLQRSYITMDKNGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPEAQIHTVTALEAAQRIGFPEARILIANIV
VDLALSPKSNSAYLAMNAALADLRRSGNLPIPRHLRDGHYSGSKTLGNARDYKYPHAYPEKWVKQQYLPDKLVGHNYFEA
NETGKYERALGSNKERIDKLSD

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=809719 QN325_RS03195 WP_000774765.1 577598..578866(-) (rarA) [Streptococcus agalactiae strain HU13/21]
ATGGCTGACAATCTTGCTCTACGTATGCGTCCTCGCAATATTAATGAAGTTATCGGGCAGCAACATCTCGTTGGTAATGG
CAAAATTATTGATCGAATGGTTGCAGCTAATATGTTATCTTCCATGATCCTATATGGCCCACCAGGTATTGGGAAGACTT
CTATTGCTTCTGCTATTGCTGGTACTACTAAATATGCCTTTCGTACTTTTAATGCCACTGTTGATAGTAAAAAACGTCTT
CAAGAAATTGCAGAAGAAGCTAAATTTTCTGGTGGCTTAGTTTTATTACTTGACGAGATTCATAGACTTGACAAGACAAA
ACAAGATTTTCTTTTACCTTTACTTGAGAATGGCAATATTATTATGATTGGAGCAACAACTGAAAATCCTTTCTTTTCAG
TAACTCCTGCCATTAGAAGTAGGGTACAAATTTTTGAGTTAGAACCTCTTTCTAACGAGGATATTAAAAAAGCCATTCAG
CTAGCAATTTCCGATAAAGAACGGGGATTTCCTTTTTTAGTGACAATTGATGATGAGGCGCTAGATTTCATTGTTACCGC
CACAAATGGAGACCTACGATCTGCTTATAATTCCTTGGATCTAGCAGTCATGTCTACTTCTCCTAATGAAGATGGTAGCC
GTCATATTAGTCTAGAGACAATGGAAAATAGTCTGCAGCGTAGTTATATTACAATGGATAAAAACGGAGATGGGCATTAT
GATGTCCTATCAGCCTTACAAAAATCAATTAGAGGTTCTGATGTCAATGCCAGCCTGCACTATGCCGCTCGTTTAGTAGA
AGCTGGAGATTTACCTAGTTTAGCAAGACGTTTGACCATTATTGCTTATGAAGATATCGGCTTAGCTAACCCCGAAGCAC
AAATACATACTGTGACTGCATTGGAAGCTGCCCAACGCATTGGTTTTCCAGAAGCTCGTATTCTTATTGCTAACATTGTT
GTGGATTTAGCTCTATCACCTAAATCAAATTCAGCCTATTTGGCTATGAATGCAGCCTTAGCTGATTTACGTCGTTCAGG
AAATTTACCTATTCCACGTCACCTAAGAGATGGACATTACAGCGGTAGTAAAACCTTGGGCAATGCAAGGGATTACAAGT
ACCCTCACGCCTATCCTGAAAAATGGGTTAAACAACAATACTTACCAGATAAACTAGTAGGACATAATTATTTTGAAGCC
AATGAAACTGGTAAATACGAACGCGCACTTGGTTCAAATAAAGAGCGCATTGATAAGCTCTCAGACTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(174-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.472

98.815

0.588