Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   RPM50_RS22870 Genome accession   NZ_CP135099
Coordinates   4995386..4996111 (-) Length   241 a.a.
NCBI ID   WP_004365178.1    Uniprot ID   A0A0H2ZL31
Organism   Pseudomonas aeruginosa strain Paer3125     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4990386..5001111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPM50_RS22845 (RPM50_22845) - 4990859..4991373 (+) 515 Protein_4514 glycine cleavage system protein R -
  RPM50_RS22850 (RPM50_22850) rarD 4992063..4992959 (-) 897 WP_003121788.1 EamA family transporter RarD -
  RPM50_RS22855 (RPM50_22855) - 4993162..4994136 (-) 975 WP_003084794.1 serine/threonine protein kinase -
  RPM50_RS22860 (RPM50_22860) - 4994198..4994956 (-) 759 WP_003103305.1 TOBE domain-containing protein -
  RPM50_RS22865 (RPM50_22865) - 4995024..4995344 (-) 321 WP_015502244.1 YfiM family lipoprotein -
  RPM50_RS22870 (RPM50_22870) comF 4995386..4996111 (-) 726 WP_004365178.1 ComF family protein Machinery gene
  RPM50_RS22875 (RPM50_22875) - 4996250..4996543 (-) 294 WP_003084806.1 hypothetical protein -
  RPM50_RS22880 (RPM50_22880) - 4996597..4997523 (-) 927 WP_003129068.1 LysR family transcriptional regulator -
  RPM50_RS22885 (RPM50_22885) - 4997641..4998399 (+) 759 WP_003111232.1 5-oxoprolinase subunit PxpA -
  RPM50_RS22890 (RPM50_22890) - 4998476..4998724 (+) 249 WP_003084813.1 acetyl-CoA carboxylase -
  RPM50_RS22895 (RPM50_22895) - 4998735..5000111 (+) 1377 WP_023092334.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  RPM50_RS22900 (RPM50_22900) - 5000113..5000991 (+) 879 WP_023092335.1 5-oxoprolinase subunit B family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27019.49 Da        Isoelectric Point: 11.0325

>NTDB_id=809657 RPM50_RS22870 WP_004365178.1 4995386..4996111(-) (comF) [Pseudomonas aeruginosa strain Paer3125]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRSDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAECLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=809657 RPM50_RS22870 WP_004365178.1 4995386..4996111(-) (comF) [Pseudomonas aeruginosa strain Paer3125]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCACGGC
GCGAACGTCGGCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCCGGCGAGCTGGACCTGCGCAGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGCCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGTGCCTTTCCCGTCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Double zinc ribbon domain (DZR_2)

(9-65)

Phosphoribosyl transferase domain (Pribosyltran)

(137-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZL31

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.174

100

0.382