Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   P6F23_RS01000 Genome accession   NZ_CP120953
Coordinates   163688..164620 (+) Length   310 a.a.
NCBI ID   WP_000138504.1    Uniprot ID   A0AAW6XWB6
Organism   Streptococcus agalactiae strain GBSIR0001     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 158688..169620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P6F23_RS00980 (P6F23_00980) - 158900..160555 (+) 1656 WP_001118756.1 peptide ABC transporter substrate-binding protein -
  P6F23_RS00985 (P6F23_00985) - 160674..161588 (+) 915 WP_000598965.1 ABC transporter permease -
  P6F23_RS00990 (P6F23_00990) - 161598..162629 (+) 1032 WP_000764052.1 ABC transporter permease -
  P6F23_RS00995 (P6F23_00995) oppD 162642..163688 (+) 1047 WP_000410286.1 ABC transporter ATP-binding protein Regulator
  P6F23_RS01000 (P6F23_01000) amiF 163688..164620 (+) 933 WP_000138504.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 310 a.a.        Molecular weight: 34901.76 Da        Isoelectric Point: 6.7289

>NTDB_id=809533 P6F23_RS01000 WP_000138504.1 163688..164620(+) (amiF) [Streptococcus agalactiae strain GBSIR0001]
MTENRKKLVEVKNVSLTFNKGKANEVRAIDNVSFDIYEGEVFGLVGESGSGKTTVGRSILKLYDISDGEITFNGEVISHL
KGKALHSFRKDAQMIFQDPQASLNGRMKIRDIVAEGLDIHKLAKSKSDRDSKVQALLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVEPKFIIADEPISALDVSIQAQVVNLMQKLQREQGLTYLFIAHDLSMVKYISDRIGVMHWGKLLEVGTSDD
VYNNPIHPYTKSLLSAIPEPDPESERQRVHQPYNPAIEQDGQERQMHEITPCHFVLSTPQEAEEYKKQIL

Nucleotide


Download         Length: 933 bp        

>NTDB_id=809533 P6F23_RS01000 WP_000138504.1 163688..164620(+) (amiF) [Streptococcus agalactiae strain GBSIR0001]
ATGACTGAAAATCGAAAAAAATTAGTTGAAGTCAAAAATGTTTCTTTGACCTTCAATAAAGGAAAAGCTAATGAAGTGAG
AGCAATTGATAATGTTAGTTTTGACATTTATGAAGGTGAAGTGTTTGGATTAGTTGGGGAATCTGGATCAGGAAAGACAA
CCGTTGGACGTTCAATTTTAAAACTTTATGATATTTCTGATGGAGAAATTACCTTTAATGGAGAAGTGATCTCACATCTG
AAAGGTAAAGCATTACATAGTTTTCGTAAAGACGCTCAGATGATTTTTCAGGATCCTCAGGCTAGCTTAAACGGCCGTAT
GAAGATTCGTGATATCGTAGCAGAAGGTTTAGATATACATAAATTAGCTAAATCAAAATCAGATCGTGATAGTAAAGTTC
AGGCCCTATTAGATCTTGTAGGGTTAAATAAAGATCATTTAACACGTTATCCGCATGAATTTTCAGGTGGACAACGACAA
CGTATCGGGATTGCACGTGCTTTAGCAGTAGAGCCTAAATTTATCATTGCTGATGAACCAATATCTGCCTTAGATGTTTC
AATCCAAGCACAAGTTGTTAATTTAATGCAAAAATTGCAAAGAGAACAAGGATTGACTTATTTGTTTATCGCACATGATT
TGTCTATGGTAAAATACATTTCAGATCGTATCGGTGTTATGCATTGGGGAAAACTGTTAGAAGTTGGGACATCTGATGAT
GTTTATAACAATCCAATCCACCCCTATACGAAGAGTCTATTATCAGCTATTCCAGAACCAGATCCGGAGAGTGAACGTCA
ACGTGTTCACCAGCCGTATAATCCAGCTATTGAGCAAGACGGACAAGAACGTCAAATGCACGAGATTACCCCTTGTCATT
TTGTTTTATCTACACCCCAAGAAGCTGAAGAATATAAAAAACAAATATTATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-271)

ABC transporter (ABC_tran)

(30-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

54.221

99.355

0.539
  amiF Streptococcus thermophilus LMG 18311

53.896

99.355

0.535
  amiF Streptococcus salivarius strain HSISS4

54.098

98.387

0.532