Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   RPM48_RS28375 Genome accession   NZ_CP135095
Coordinates   6079646..6080371 (-) Length   241 a.a.
NCBI ID   WP_014604095.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain Paer3771     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6074646..6085371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPM48_RS28350 (RPM48_28350) - 6075118..6075633 (+) 516 WP_003084789.1 glycine cleavage system protein R -
  RPM48_RS28355 (RPM48_28355) rarD 6076323..6077219 (-) 897 WP_003084792.1 EamA family transporter RarD -
  RPM48_RS28360 (RPM48_28360) - 6077422..6078396 (-) 975 WP_023098431.1 serine/threonine protein kinase -
  RPM48_RS28365 (RPM48_28365) - 6078458..6079216 (-) 759 WP_003084796.1 TOBE domain-containing protein -
  RPM48_RS28370 (RPM48_28370) - 6079284..6079604 (-) 321 WP_003084799.1 YfiM family lipoprotein -
  RPM48_RS28375 (RPM48_28375) comF 6079646..6080371 (-) 726 WP_014604095.1 ComF family protein Machinery gene
  RPM48_RS28380 (RPM48_28380) - 6080510..6080803 (-) 294 WP_003084806.1 hypothetical protein -
  RPM48_RS28385 (RPM48_28385) - 6080857..6081783 (-) 927 WP_003129068.1 LysR family transcriptional regulator -
  RPM48_RS28390 (RPM48_28390) - 6081901..6082659 (+) 759 WP_003084810.1 5-oxoprolinase subunit PxpA -
  RPM48_RS28395 (RPM48_28395) - 6082736..6082984 (+) 249 WP_003084813.1 acetyl-CoA carboxylase -
  RPM48_RS28400 (RPM48_28400) - 6082995..6084371 (+) 1377 WP_003084815.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  RPM48_RS28405 (RPM48_28405) - 6084373..6085251 (+) 879 WP_003084817.1 5-oxoprolinase subunit B family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26982.50 Da        Isoelectric Point: 10.3093

>NTDB_id=809364 RPM48_RS28375 WP_014604095.1 6079646..6080371(-) (comF) [Pseudomonas aeruginosa strain Paer3771]
MSFPLRPLTRWLLPPPACLLCAACSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAECLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=809364 RPM48_RS28375 WP_014604095.1 6079646..6080371(-) (comF) [Pseudomonas aeruginosa strain Paer3771]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCTGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCACGGC
GCGAACGTCGGCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCCGGCGAGCTGGACCTGCGCTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGGCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGTGCCTTTCCCGTCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.174

100

0.382