Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   RPM48_RS20045 Genome accession   NZ_CP135095
Coordinates   4255852..4256277 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain Paer3771     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4250852..4261277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPM48_RS20030 (RPM48_20030) pilX 4251416..4252003 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  RPM48_RS20035 (RPM48_20035) pilY1 4252015..4255506 (+) 3492 WP_003094704.1 type 4a pilus biogenesis protein PilY1 -
  RPM48_RS20040 (RPM48_20040) pilY2 4255508..4255855 (+) 348 WP_003094713.1 type 4a fimbrial biogenesis protein PilY2 -
  RPM48_RS20045 (RPM48_20045) comF 4255852..4256277 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  RPM48_RS20050 (RPM48_20050) ispH 4256324..4257268 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RPM48_RS20055 (RPM48_20055) fkpB 4257354..4257794 (-) 441 WP_003094726.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  RPM48_RS20060 (RPM48_20060) lspA 4257787..4258296 (-) 510 WP_003094728.1 signal peptidase II -
  RPM48_RS20065 (RPM48_20065) ileS 4258289..4261120 (-) 2832 WP_003094730.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=809326 RPM48_RS20045 WP_003094721.1 4255852..4256277(+) (comF) [Pseudomonas aeruginosa strain Paer3771]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=809326 RPM48_RS20045 WP_003094721.1 4255852..4256277(+) (comF) [Pseudomonas aeruginosa strain Paer3771]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGCTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383