Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   RMP66_RS02865 Genome accession   NZ_CP135094
Coordinates   588402..590171 (+) Length   589 a.a.
NCBI ID   WP_024394364.1    Uniprot ID   -
Organism   Streptococcus suis strain 1547095     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 583402..595171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMP66_RS02835 (RMP66_02835) - 584213..584968 (+) 756 WP_024394362.1 class I SAM-dependent methyltransferase -
  RMP66_RS02840 (RMP66_02840) pcp 584965..585612 (+) 648 WP_002940685.1 pyroglutamyl-peptidase I -
  RMP66_RS02845 (RMP66_02845) - 585612..585920 (+) 309 WP_024394363.1 DUF4298 domain-containing protein -
  RMP66_RS02850 (RMP66_02850) rpsP 586045..586317 (+) 273 WP_002940682.1 30S ribosomal protein S16 -
  RMP66_RS02855 (RMP66_02855) - 586339..586581 (+) 243 WP_012028079.1 KH domain-containing protein -
  RMP66_RS02860 (RMP66_02860) rcrP 586657..588393 (+) 1737 WP_012775079.1 ABC transporter ATP-binding protein Regulator
  RMP66_RS02865 (RMP66_02865) rcrQ 588402..590171 (+) 1770 WP_024394364.1 ABC transporter ATP-binding protein Regulator
  RMP66_RS02870 (RMP66_02870) - 590228..591151 (-) 924 WP_024394365.1 polysaccharide deacetylase family protein -
  RMP66_RS02875 (RMP66_02875) - 591256..592542 (+) 1287 WP_014637977.1 homoserine dehydrogenase -
  RMP66_RS02880 (RMP66_02880) thrB 592546..593406 (+) 861 WP_011922331.1 homoserine kinase -
  RMP66_RS02885 (RMP66_02885) murB 593642..594550 (+) 909 WP_024394366.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65889.82 Da        Isoelectric Point: 5.1568

>NTDB_id=809206 RMP66_RS02865 WP_024394364.1 588402..590171(+) (rcrQ) [Streptococcus suis strain 1547095]
MKNRSVFTRVWDYLRRYQSSVFLAVFLKTISAVMNALEPFVLGLIITELTKNLLDIANGVEGAQINYSYIAIMLAIYALR
ALLYEIGAYGSNYFMTKAVQGATKELRQDLSHKINKIPVSYFDKHQYGDLLGRFTSDVETVSNALQQSFLQLVNAVLTLS
LAIFMCFWLDVSLALVVITLVPVTYFGSKFVMGKSQPYFKQQADALGRLNGFVQENLTGFNVLKLYGREEISTEEFRQIT
ADLQEVGFKASFMSGLLMPLVHGFSNIAYVVVALLSGLKVLAGTLTVGNMQAFVQYVWQISQPVQTLTQLAPQLQSAKSS
LERIFSVLDELDEEDANALELTESLTGQVSFEQVEFGYSEDKPLIRNFNLDVQPGEMVAIVGPTGAGKTTLINLLMRFYD
VTSGAIKVDGQDIRNLSRQSYRSQFGMVLQDAWLYEGTIKENLRFGRLDATDEEIVEVAKAANVDHFIRTLPGGYNMEMN
QESSNISQGQKQLLTIARALLADPAILILDEATSSVDTRLELLIQKAMKRLMKGRTSFVIAHRLSTIQEADKILVLKDGQ
IIEQGNHESLLADKGFYYNLYQSQFSESK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=809206 RMP66_RS02865 WP_024394364.1 588402..590171(+) (rcrQ) [Streptococcus suis strain 1547095]
ATGAAGAATAGATCAGTATTTACCCGTGTTTGGGACTATTTGCGTCGTTACCAATCTTCTGTATTTTTAGCCGTTTTTCT
AAAGACCATCAGTGCAGTTATGAATGCCTTAGAACCCTTTGTGCTGGGGCTTATCATTACAGAATTGACCAAGAATTTGT
TGGATATTGCTAATGGAGTAGAAGGAGCGCAGATTAACTATTCCTACATTGCCATCATGCTTGCCATCTATGCCCTTCGC
GCCCTTCTATATGAAATCGGTGCCTACGGTTCTAACTATTTTATGACCAAGGCAGTGCAGGGAGCAACTAAGGAACTACG
TCAGGATTTGAGCCACAAAATTAACAAGATTCCAGTATCTTATTTTGACAAGCACCAGTATGGTGATTTACTTGGACGTT
TTACAAGCGATGTGGAGACTGTTTCAAACGCCCTGCAACAAAGTTTTCTCCAGCTAGTCAATGCCGTTCTGACCCTCTCT
CTAGCCATTTTCATGTGTTTCTGGTTGGATGTATCCCTAGCACTTGTAGTCATAACCTTGGTTCCAGTGACCTATTTTGG
TTCTAAGTTTGTCATGGGCAAATCCCAGCCATATTTCAAGCAGCAGGCTGATGCCCTAGGTCGTTTGAACGGCTTTGTCC
AAGAAAATCTGACTGGTTTTAACGTTCTCAAACTCTACGGCCGTGAAGAAATTTCTACAGAAGAGTTTCGCCAGATTACC
GCAGATTTGCAGGAAGTTGGTTTCAAGGCTAGTTTCATGTCTGGTTTGCTCATGCCTCTAGTTCACGGCTTCTCAAACAT
CGCCTACGTTGTCGTCGCCCTGCTATCTGGATTGAAAGTTCTTGCAGGTACATTGACGGTGGGTAATATGCAGGCCTTCG
TCCAATACGTCTGGCAGATTTCTCAGCCAGTCCAAACCTTGACCCAATTGGCACCACAGTTGCAGTCTGCCAAATCTTCC
CTTGAACGCATCTTTTCAGTCTTAGATGAGCTTGACGAAGAAGACGCCAATGCACTAGAGTTGACAGAAAGTCTGACCGG
ACAAGTCAGCTTTGAGCAGGTCGAATTTGGCTATTCAGAAGATAAGCCGCTCATCCGTAACTTTAATCTGGATGTTCAAC
CCGGTGAGATGGTGGCCATCGTTGGTCCAACAGGGGCAGGTAAGACTACCCTCATCAACCTTCTCATGCGTTTCTATGAT
GTCACATCAGGTGCTATCAAGGTAGATGGGCAGGATATTCGAAATCTTTCTCGTCAATCCTACCGTAGTCAATTTGGCAT
GGTCTTGCAGGATGCTTGGCTCTATGAAGGGACCATCAAGGAAAACCTGCGTTTTGGACGTCTGGATGCGACGGATGAGG
AAATTGTGGAGGTTGCTAAAGCTGCCAACGTTGACCACTTTATCCGTACCCTGCCTGGTGGTTATAATATGGAAATGAAC
CAGGAATCCAGCAATATTTCCCAAGGTCAGAAACAGCTTTTGACCATTGCGCGTGCCTTGTTGGCGGATCCTGCTATTCT
GATTCTTGACGAAGCGACTTCTTCAGTTGATACCCGTTTGGAACTCTTGATTCAAAAAGCCATGAAACGGTTGATGAAAG
GGCGGACAAGTTTCGTCATCGCTCATCGCTTATCTACCATTCAGGAAGCTGATAAGATTTTGGTCTTGAAAGATGGACAG
ATTATCGAACAAGGTAACCATGAAAGTCTTTTGGCAGACAAAGGTTTCTATTATAATCTTTATCAAAGCCAGTTTAGTGA
GTCCAAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(366-514)

ABC transporter transmembrane region (ABC_membrane)

(21-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.39

100

0.435