Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   RMP64_RS07800 Genome accession   NZ_CP135093
Coordinates   1584948..1586684 (-) Length   578 a.a.
NCBI ID   WP_313921505.1    Uniprot ID   -
Organism   Streptococcus suis strain 1652329     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1579948..1591684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMP64_RS07785 (RMP64_07785) - 1580799..1582085 (-) 1287 WP_014637977.1 homoserine dehydrogenase -
  RMP64_RS07790 (RMP64_07790) - 1582190..1583113 (+) 924 WP_024394365.1 polysaccharide deacetylase family protein -
  RMP64_RS07795 (RMP64_07795) rcrQ 1583170..1584939 (-) 1770 WP_024394364.1 ABC transporter ATP-binding protein Regulator
  RMP64_RS07800 (RMP64_07800) rcrP 1584948..1586684 (-) 1737 WP_313921505.1 ABC transporter ATP-binding protein Regulator
  RMP64_RS07805 (RMP64_07805) - 1586760..1587002 (-) 243 WP_012028079.1 KH domain-containing protein -
  RMP64_RS07810 (RMP64_07810) rpsP 1587024..1587296 (-) 273 WP_002940682.1 30S ribosomal protein S16 -
  RMP64_RS07815 (RMP64_07815) - 1587421..1587729 (-) 309 WP_024394363.1 DUF4298 domain-containing protein -
  RMP64_RS07820 (RMP64_07820) pcp 1587729..1588376 (-) 648 WP_002940685.1 pyroglutamyl-peptidase I -
  RMP64_RS07825 (RMP64_07825) - 1588373..1589128 (-) 756 WP_024394362.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 65154.49 Da        Isoelectric Point: 5.1965

>NTDB_id=809146 RMP64_RS07800 WP_313921505.1 1584948..1586684(-) (rcrP) [Streptococcus suis strain 1652329]
MNLIWTYLKKYPKWIALDLLGAFLFVVVNLGLPTFLARMIDQGITKNDVSQLYFWAGMMGLIVLLGIVGRVTLAYAAGKL
TTNIVKDIRNDLYEKIQDYSHHEYEQIGVSSLVARMTNDAFVLMQFSEMVLKLGIITPLMMIASVIMTLVTSPSLAWTVA
VAMPFLVFVIFYVATKTRPLSEKQQKRLDTINQYVRENLMGLRVIRAFTREEFQEERFESVNEEYTDISKKLFNLTGLTE
PLFVQIIIAMIVAIVWFALDPLKIGSLQIGDLVAFIEYSFHALFSFLLFANLFNMYPRMSVSSQRIQEVLDMPISISKNE
DGITETDTRGYLEFENVTFAYPGETESPVLHNISFKAKPGETIAFIGSTGSGKSSLVNLIPRFYDVTLGRILVDGVDVRR
YNLKALRSKIGFIPQKALLFTGTIAENLKYGKMDASLAELHDATDVAQAKEFIESKEEKFDTHLAEGGSNLSGGQKQRLS
IARAIVKQPDIYIFDDSFSALDYKTDAILRSRLKEVTENATVLIVAQRVGTIMDADQIIVLNEGEIVGRGTHNELMESNE
IYREIANSQLNRQSLTEE

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=809146 RMP64_RS07800 WP_313921505.1 1584948..1586684(-) (rcrP) [Streptococcus suis strain 1652329]
ATGAATCTGATTTGGACCTATTTGAAAAAATATCCTAAGTGGATTGCCTTAGACTTGTTGGGGGCCTTCTTATTTGTAGT
GGTAAACTTAGGCTTGCCGACTTTTTTGGCTAGGATGATTGACCAAGGAATTACAAAGAACGATGTTAGTCAGCTCTATT
TCTGGGCGGGGATGATGGGATTGATTGTCCTGCTCGGGATTGTTGGTCGAGTGACACTTGCCTATGCAGCTGGAAAGTTG
ACTACCAACATCGTCAAAGATATTCGAAATGATCTGTATGAGAAAATTCAGGACTATTCTCATCATGAATATGAGCAGAT
TGGTGTTTCTTCTCTAGTTGCTCGTATGACAAATGATGCTTTTGTTCTCATGCAATTCTCTGAAATGGTCTTGAAACTAG
GTATTATTACACCCTTGATGATGATTGCTTCTGTCATCATGACCTTGGTAACCAGTCCGAGCTTAGCCTGGACAGTAGCA
GTAGCTATGCCATTTTTGGTTTTCGTCATTTTTTATGTAGCTACTAAAACTCGTCCTCTTTCTGAAAAGCAACAGAAACG
TTTGGATACGATCAACCAATATGTTCGTGAAAATCTCATGGGCTTACGTGTCATTCGTGCCTTTACTCGTGAGGAGTTTC
AAGAGGAGCGCTTTGAGTCGGTCAATGAGGAATATACCGATATTTCCAAAAAGCTCTTTAATCTGACTGGATTGACAGAG
CCTCTCTTTGTCCAGATTATCATTGCTATGATTGTGGCCATTGTCTGGTTTGCTTTGGATCCCTTGAAAATAGGCAGTCT
GCAAATCGGTGATTTGGTAGCCTTTATCGAATATAGTTTCCACGCGCTTTTCTCTTTCTTGCTCTTTGCTAACTTGTTTA
ACATGTATCCACGTATGTCGGTGTCTAGTCAGCGAATTCAAGAAGTGCTAGATATGCCGATTTCTATTTCTAAGAATGAA
GACGGCATAACTGAAACAGATACTCGTGGTTATTTGGAATTTGAAAATGTAACTTTTGCCTACCCTGGTGAAACGGAATC
GCCTGTGCTGCACAATATTTCCTTCAAAGCTAAGCCTGGTGAAACGATTGCCTTTATTGGTTCAACAGGTTCTGGTAAGT
CTTCCTTGGTCAACTTGATTCCACGTTTCTATGATGTGACACTTGGTCGTATCTTGGTGGACGGTGTGGATGTCAGACGC
TACAATCTAAAGGCACTCCGCAGCAAGATTGGCTTTATTCCACAGAAAGCTCTGCTATTTACCGGAACTATCGCGGAAAA
CTTAAAGTACGGTAAGATGGATGCTAGTCTTGCAGAACTTCATGATGCGACAGATGTGGCTCAGGCTAAGGAGTTTATCG
AGAGTAAGGAAGAAAAATTCGACACCCACTTGGCTGAGGGCGGCAGCAACCTGTCAGGCGGGCAAAAGCAACGTTTGTCC
ATTGCACGTGCTATTGTGAAGCAGCCGGATATTTACATTTTTGATGATTCTTTCTCAGCATTGGATTATAAGACGGATGC
AATTTTGCGGAGTCGTTTGAAGGAAGTGACGGAAAATGCGACGGTGCTAATTGTGGCTCAACGTGTCGGAACCATTATGG
ATGCTGACCAGATTATCGTGCTGAACGAAGGTGAAATCGTTGGCCGCGGCACCCACAATGAATTGATGGAAAGCAATGAG
ATTTACCGAGAAATTGCCAACTCTCAACTTAACCGTCAATCGTTAACAGAAGAATAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(20-280)

ABC transporter (ABC_tran)

(350-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.5

100

0.4