Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   RMQ61_RS02015 Genome accession   NZ_CP135090
Coordinates   392137..392925 (+) Length   262 a.a.
NCBI ID   WP_023369388.1    Uniprot ID   -
Organism   Streptococcus suis strain ID48908     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 387137..397925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ61_RS01995 (RMQ61_01995) - 387443..388402 (-) 960 WP_313921046.1 asparaginase -
  RMQ61_RS02000 (RMQ61_02000) - 388472..389837 (+) 1366 Protein_355 Cof-type HAD-IIB family hydrolase -
  RMQ61_RS02005 (RMQ61_02005) - 389853..390305 (-) 453 WP_004195772.1 universal stress protein -
  RMQ61_RS02010 (RMQ61_02010) - 390460..391674 (+) 1215 WP_313921047.1 pyridoxal phosphate-dependent aminotransferase -
  RMQ61_RS02015 (RMQ61_02015) codY 392137..392925 (+) 789 WP_023369388.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  RMQ61_RS02020 (RMQ61_02020) - 392927..393478 (+) 552 WP_024376330.1 cysteine hydrolase family protein -
  RMQ61_RS02025 (RMQ61_02025) - 393734..394114 (+) 381 WP_313926457.1 hypothetical protein -
  RMQ61_RS02030 (RMQ61_02030) - 394139..394477 (+) 339 WP_313926609.1 hypothetical protein -
  RMQ61_RS02035 (RMQ61_02035) - 394458..394919 (+) 462 WP_313926458.1 hypothetical protein -
  RMQ61_RS02040 (RMQ61_02040) - 394921..395595 (+) 675 WP_313926459.1 DUF2786 domain-containing protein -
  RMQ61_RS02045 (RMQ61_02045) - 395610..395774 (+) 165 WP_153308649.1 hypothetical protein -
  RMQ61_RS02050 (RMQ61_02050) - 395784..396851 (+) 1068 WP_313926460.1 replication initiator protein A -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29334.37 Da        Isoelectric Point: 4.6190

>NTDB_id=809008 RMQ61_RS02015 WP_023369388.1 392137..392925(+) (codY) [Streptococcus suis strain ID48908]
MTTLLEKTRNITSILKRSEEQLAEELPYNAIAEHLSAIIDCNSCIINSEGEVLGYHMNYETNNDRVEEFFQNKQFPEGYV
KAVAQVYDTQVNLPVESELTAIPVESRSTYPNGLTTIAPIHVTGIRFGSLIIWRNDEQFHDDDLILVEIAATVVGIQLLN
FQREEDEKNIRRRAAVNMAVNTLSYSEMKAVAAILGELDGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPAIFDEIKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=809008 RMQ61_RS02015 WP_023369388.1 392137..392925(+) (codY) [Streptococcus suis strain ID48908]
ATGACAACATTATTAGAGAAGACACGGAATATTACTTCTATTTTGAAGCGTTCCGAAGAGCAATTGGCAGAAGAATTGCC
TTACAATGCCATTGCTGAGCATTTATCAGCTATTATTGATTGCAACTCGTGCATCATTAATAGTGAAGGTGAAGTTTTGG
GATACCACATGAACTATGAGACGAACAATGATCGTGTGGAAGAATTTTTCCAAAACAAACAATTCCCAGAAGGATATGTA
AAAGCAGTTGCGCAGGTTTACGATACGCAGGTTAATTTGCCTGTCGAGAGCGAGTTGACTGCCATCCCTGTCGAATCACG
ATCGACTTATCCAAACGGGCTGACAACGATAGCGCCTATCCACGTAACGGGGATTCGTTTTGGTTCGCTTATTATTTGGC
GGAATGATGAGCAGTTTCACGATGATGATTTGATTTTGGTTGAGATTGCGGCAACAGTAGTTGGTATTCAGTTACTTAAT
TTCCAACGGGAAGAAGACGAGAAGAATATCCGTCGTCGTGCGGCAGTTAATATGGCGGTAAATACGCTGTCTTACTCAGA
AATGAAGGCAGTTGCAGCTATTTTGGGTGAATTGGATGGCAATGAGGGGCAATTGACTGCTTCTGTGATTGCAGATCGTA
TCGGTATTACACGCTCGGTGATTGTGAATGCACTGCGTAAGTTGGAGAGTGCAGGGATTATTGAAAGTCGTTCTTTGGGA
ATGAAGGGGACTTATTTGAAAGTTCTCATCCCAGCTATTTTTGATGAAATTAAGAAACGTGACTACTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(202-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

59.16

100

0.592
  codY Bacillus subtilis subsp. subtilis str. 168

52.846

93.893

0.496