Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutS/mutS2   Type   Machinery gene
Locus tag   RMQ61_RS01245 Genome accession   NZ_CP135090
Coordinates   231055..233388 (+) Length   777 a.a.
NCBI ID   WP_172047803.1    Uniprot ID   -
Organism   Streptococcus suis strain ID48908     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 226055..238388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ61_RS01225 (RMQ61_01225) treP 226731..228594 (-) 1864 Protein_208 PTS system trehalose-specific EIIBC component -
  RMQ61_RS01230 (RMQ61_01230) treR 228934..229647 (+) 714 WP_313921434.1 trehalose operon repressor Regulator
  RMQ61_RS01235 (RMQ61_01235) - 229705..230016 (+) 312 WP_002935948.1 hypothetical protein -
  RMQ61_RS01240 (RMQ61_01240) - 230013..230561 (+) 549 WP_002935945.1 CvpA family protein -
  RMQ61_RS01245 (RMQ61_01245) mutS/mutS2 231055..233388 (+) 2334 WP_172047803.1 endonuclease MutS2 Machinery gene
  RMQ61_RS01250 (RMQ61_01250) - 233412..234065 (+) 654 WP_024386974.1 GNAT family N-acetyltransferase -
  RMQ61_RS01255 (RMQ61_01255) tnpA 234241..234755 (+) 515 Protein_214 IS200/IS605 family transposase -
  RMQ61_RS01260 (RMQ61_01260) trxA 235394..235708 (+) 315 WP_012775426.1 thioredoxin -
  RMQ61_RS01265 (RMQ61_01265) msrB 235760..236698 (+) 939 WP_313920949.1 peptide-methionine (R)-S-oxide reductase MsrB -
  RMQ61_RS01270 (RMQ61_01270) - 236835..237692 (+) 858 WP_105105779.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 777 a.a.        Molecular weight: 87580.32 Da        Isoelectric Point: 6.7387

>NTDB_id=809006 RMQ61_RS01245 WP_172047803.1 231055..233388(+) (mutS/mutS2) [Streptococcus suis strain ID48908]
MNNKIIETLEFHKVRQKIEPYLLTEQGFEELRQLEPMVEVHRIQQAFDELTDIAQIFVENPYFSLAATSDIGPAMRRLEL
DTDLNIAELLAVKKVLEVSKSLLDFYGNLENVSLSQLDKLFEKIELFPHLQGSLQSINDAGFVEDFASEKLARIRRKIRE
AEDQVRQVMQDILKTKGDMLSDSILASRNGRNVLPVKNTYRNKIAGVVHDISASGSTVYIEPRAVVTLNEEISHLRAEER
HELNRILQELSDMLRPHSGVIRNNAWLIGHIDFVRAKHLFAREHQAVVPKLSEKQDIALLNVRHPLIAKPVPNDLYFGSQ
LTAIVITGPNTGGKTIMLKTLGLTHLMAQSGLPILADKGSRVAIFKEIFADIGDEQSIEQSLSTFSSHMTHTVEILRAAD
QDSLILFDELGAGTDPQEGASLAMAILDDLRLRGIKTMATTHYPELKAYGIETSGIENASMEFDSNSLRPTYKFMQGVPG
RSNAFEIARRLGLSDIIIQSAQSWTDTDSDVNRIIEKLESQTVESRQRLDKIRDVEQENYKMNRALRKLYDELNRERENE
LNKARLEAKEIVDMALAESEDILKNLHAAASLKPHQIIEAKAELKKLAPEVVDLSKNKVLKKAKIQREAKVGDDIIVTAY
GQRGTLTNQLKDGRWEAQVGLIKMTLAKDEFELVKAEKAEQPKKRQVHTVKRANVRGPKARLDLRGKRYEEAMMELDEFI
DQALLNNLAQVDIVHGIGTGVIREGVTKYLRRNKQVKEFGYAPQNAGGSGCTIVTFK

Nucleotide


Download         Length: 2334 bp        

>NTDB_id=809006 RMQ61_RS01245 WP_172047803.1 231055..233388(+) (mutS/mutS2) [Streptococcus suis strain ID48908]
ATGAATAATAAAATTATTGAAACCCTTGAATTTCACAAGGTAAGACAAAAAATTGAGCCCTATCTCTTGACGGAACAGGG
CTTTGAAGAATTACGACAGTTGGAGCCCATGGTGGAAGTCCACCGTATCCAACAGGCCTTCGACGAGTTGACAGACATAG
CGCAGATTTTTGTGGAAAATCCCTATTTCAGTCTGGCTGCTACTAGTGACATCGGTCCAGCCATGCGTCGTTTGGAATTG
GATACAGACCTCAATATCGCTGAATTATTAGCTGTTAAAAAGGTCTTGGAAGTTTCTAAATCTCTCTTGGATTTTTATGG
AAATCTGGAAAATGTCAGTCTTAGCCAGCTGGATAAACTCTTTGAGAAGATTGAGCTTTTTCCACATTTACAGGGCTCCC
TCCAGTCCATCAATGATGCTGGTTTTGTAGAGGATTTTGCCTCAGAAAAGCTGGCTCGTATCCGCCGGAAAATCCGTGAA
GCTGAAGACCAAGTTCGTCAGGTCATGCAGGATATTTTGAAGACTAAGGGCGACATGCTGTCCGATAGCATTTTAGCAAG
TCGTAATGGACGCAATGTCCTTCCTGTTAAAAATACCTATCGCAATAAGATTGCAGGAGTTGTCCATGACATTTCAGCTT
CGGGTTCGACCGTTTATATTGAGCCGCGGGCAGTGGTGACCTTGAACGAAGAAATCAGTCACCTACGTGCAGAAGAACGC
CATGAGCTCAACCGTATCTTGCAGGAATTGTCGGATATGCTCCGTCCGCATAGTGGCGTGATTCGTAACAATGCCTGGCT
TATCGGGCATATTGATTTCGTCCGTGCTAAGCATCTCTTTGCGCGTGAACATCAAGCAGTTGTACCCAAACTATCTGAGA
AGCAGGATATTGCCCTTCTCAACGTTCGGCATCCGCTCATTGCTAAGCCTGTACCAAATGACCTTTATTTCGGTAGTCAG
TTGACGGCTATCGTGATAACAGGTCCCAACACAGGTGGTAAGACCATCATGCTTAAGACCTTGGGTTTGACCCATCTGAT
GGCCCAGTCTGGTTTACCTATCTTGGCTGATAAGGGCAGTCGGGTAGCTATCTTCAAAGAAATTTTTGCGGATATTGGTG
ATGAACAGTCGATTGAGCAGAGTTTATCAACCTTCTCCAGTCACATGACCCACACGGTGGAAATTTTAAGAGCAGCTGAT
CAAGATTCTCTCATTCTATTTGACGAGTTGGGAGCGGGGACAGATCCGCAGGAGGGGGCATCCTTGGCTATGGCTATTTT
GGATGACCTTCGTCTGCGGGGGATCAAGACCATGGCGACCACCCACTACCCTGAGCTTAAGGCCTACGGGATAGAAACCT
CTGGTATTGAAAATGCCAGCATGGAGTTTGATAGCAATAGCCTGCGTCCGACCTATAAGTTTATGCAGGGTGTTCCTGGT
CGCTCCAATGCCTTTGAAATTGCTCGCCGTCTGGGTCTATCTGACATCATTATCCAGTCGGCTCAGTCTTGGACCGATAC
AGATAGCGATGTGAACCGCATTATCGAGAAATTGGAAAGTCAGACGGTTGAAAGTCGTCAGCGTCTGGATAAGATTCGTG
ATGTGGAGCAAGAAAATTACAAGATGAACCGAGCCCTCCGCAAGCTCTATGACGAGCTCAATCGTGAGCGAGAAAATGAG
CTCAACAAGGCACGCTTGGAAGCCAAGGAAATTGTAGATATGGCATTGGCAGAAAGCGAGGATATTCTCAAAAATCTCCA
TGCTGCAGCCAGTCTTAAGCCCCACCAGATTATCGAAGCCAAGGCAGAGCTGAAAAAGTTGGCGCCTGAAGTGGTGGATC
TGTCTAAAAACAAGGTTCTGAAGAAAGCTAAAATTCAGAGGGAAGCCAAGGTGGGTGATGACATTATCGTTACAGCTTAT
GGACAACGTGGGACCTTGACCAATCAGCTCAAGGACGGGCGTTGGGAAGCTCAGGTTGGCTTGATTAAGATGACCTTGGC
CAAAGATGAGTTTGAGTTAGTCAAGGCGGAAAAGGCAGAGCAGCCTAAGAAACGCCAGGTTCACACAGTCAAACGTGCCA
ATGTACGAGGACCAAAAGCCCGCTTAGATCTCCGTGGCAAACGCTACGAAGAGGCTATGATGGAACTGGATGAATTTATC
GATCAGGCCCTTCTCAATAACCTAGCCCAAGTCGATATTGTCCACGGTATTGGTACTGGAGTTATCCGAGAAGGGGTGAC
CAAGTACCTACGCCGCAATAAGCAGGTCAAGGAGTTCGGCTACGCTCCACAAAATGCAGGTGGATCAGGCTGTACTATTG
TGACGTTTAAATAG

Domains

Predicted by InterProScan.

MutS2 and Smr-associated SH3 domain (MSSS)

(631-670)

MutS domain V (MutS_V)

(324-504)

Smr domain (Smr)

(702-777)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutS/mutS2 Bacillus subtilis subsp. subtilis str. 168

39.646

100

0.404