Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   RMQ61_RS01195 Genome accession   NZ_CP135090
Coordinates   217829..220318 (-) Length   829 a.a.
NCBI ID   WP_313920942.1    Uniprot ID   -
Organism   Streptococcus suis strain ID48908     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 212829..225318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ61_RS01170 (RMQ61_01170) dinB 213445..214512 (+) 1068 WP_024383155.1 DNA polymerase IV -
  RMQ61_RS01175 (RMQ61_01175) - 214555..214974 (+) 420 WP_313926437.1 Rrf2 family transcriptional regulator -
  RMQ61_RS01180 (RMQ61_01180) - 215213..215838 (+) 626 Protein_199 NAD(P)-dependent oxidoreductase -
  RMQ61_RS01185 (RMQ61_01185) - 215943..216863 (+) 921 WP_313920940.1 PfkB family carbohydrate kinase -
  RMQ61_RS01190 (RMQ61_01190) - 216911..217549 (+) 639 WP_313920941.1 endonuclease III domain-containing protein -
  RMQ61_RS01195 (RMQ61_01195) recD/recD2/recDB 217829..220318 (-) 2490 WP_313920942.1 ATP-dependent RecD-like DNA helicase Machinery gene
  RMQ61_RS01200 (RMQ61_01200) lepB 220382..221011 (-) 630 WP_002935959.1 signal peptidase I -
  RMQ61_RS01205 (RMQ61_01205) rnhC 221021..221911 (-) 891 WP_013730101.1 ribonuclease HIII -
  RMQ61_RS01210 (RMQ61_01210) - 221996..222979 (+) 984 WP_313920943.1 Gfo/Idh/MocA family oxidoreductase -
  RMQ61_RS01215 (RMQ61_01215) - 223328..224530 (+) 1203 WP_313920944.1 LysM domain-containing protein -

Sequence

Protein


Download         Length: 829 a.a.        Molecular weight: 93059.25 Da        Isoelectric Point: 4.4975

>NTDB_id=809004 RMQ61_RS01195 WP_313920942.1 217829..220318(-) (recD/recD2/recDB) [Streptococcus suis strain ID48908]
MNEVYFTGTIDRIIFENPSNFYKILLLEIEETDADYDDYEIIVTGTIADVIEGEDYRFYGNLVTHPKYGQQLQISRYERS
KPTSAGLVKYFSSEHFKGIGRKTAEKIVELYGEDTIDKILAEPEKLTQITGLSSKNMQAFVEKLRLNYGTELILAKLAEY
GIPNKLAFQIQDQYKEKTLQIIEENPYQLVEDVQGLGFTIADRIAENLGIASDSPQRFRAGMLFSLIHRSMETGDTYVEA
RDLLEATLELLEKSRHTELDPAAVAKELTGLIADDKVQQEGTKIFDNSLYFAEHGIHKNLTRLMGKNGFKPFPRADVEAA
IAELESMSSLTYDDIQKEAIVQAITNPLFILTGGPGTGKTTVINGIIAVYAILHKIDLTSNREECPVLLAAPTGRAARRM
NELTGLPSATIHRHLGLVEGQEESYRDDYLEADFIIVDEFSMVDTWLANQLFQNISSQTQVLIVGDAEQLPSVSPGQVLA
DLLKIDKLPSITLERIYRQSDDSTIVTLASQIRQGALPSDFREKKADRSYFEAQNEQIPALIERIVGAAIKSGIPANEVQ
ILAPMYRGVAGIDQLNTMTQALLNPLEEGELEFLHNEQAFRQGDRVIHLVNDAEANVFNGDLGYITDLLPAKYTDSKQDE
ITINFDGSEVTYPRNEWYKITLAYAMSIHKSQGSEFQVVILPITRTSHRMLQRNLVYTAITRSKSKLILLGEISAFDYAV
KNAGTVRKTYLVPRFQGEMAELGSKEALTEKDESKTTETTQTQPPTQPDRKEQVEAVKENNQQLSLLDQDQPEKTSPQPT
EYILTVDNLLTIDPMIGIEQADIEEFFKA

Nucleotide


Download         Length: 2490 bp        

>NTDB_id=809004 RMQ61_RS01195 WP_313920942.1 217829..220318(-) (recD/recD2/recDB) [Streptococcus suis strain ID48908]
ATGAACGAAGTGTATTTTACCGGTACTATTGACCGGATTATTTTTGAAAATCCTAGTAATTTTTATAAAATCCTTCTCCT
TGAAATCGAGGAGACAGACGCAGACTATGATGACTACGAAATTATTGTGACCGGAACGATTGCCGATGTCATTGAAGGAG
AAGACTATCGTTTCTATGGCAATCTGGTTACCCATCCCAAGTATGGTCAGCAACTGCAAATTTCGCGTTACGAACGCAGC
AAGCCTACCTCAGCTGGTCTGGTCAAGTATTTCTCCAGCGAGCATTTCAAGGGAATTGGACGCAAAACAGCTGAAAAAAT
CGTTGAGCTCTATGGCGAAGATACCATTGATAAGATTTTAGCTGAACCTGAAAAACTAACCCAAATCACAGGCCTATCCA
GCAAGAACATGCAGGCATTTGTCGAAAAACTCCGCCTCAATTATGGAACCGAGTTGATCTTGGCAAAACTAGCCGAGTAT
GGCATTCCCAATAAATTGGCCTTTCAAATCCAAGACCAGTATAAGGAAAAAACACTCCAAATAATTGAAGAAAATCCCTA
TCAACTGGTCGAAGATGTCCAGGGGCTCGGCTTTACCATTGCCGATAGGATTGCGGAAAACCTGGGAATTGCCAGTGATT
CACCCCAACGTTTTCGGGCTGGCATGCTCTTTAGCCTCATCCATCGCTCCATGGAAACAGGCGATACCTATGTGGAGGCC
AGAGACTTGCTGGAAGCAACCCTTGAACTGCTGGAAAAATCCCGCCATACAGAGCTGGACCCCGCTGCTGTTGCCAAAGA
ATTGACGGGACTGATTGCAGACGACAAGGTTCAGCAAGAAGGCACAAAGATTTTTGATAACAGCCTCTACTTTGCCGAAC
ATGGTATCCATAAAAACCTGACCCGCCTGATGGGAAAAAATGGTTTCAAACCCTTCCCACGCGCAGACGTTGAGGCTGCC
ATAGCAGAGCTGGAAAGCATGTCTTCTCTCACCTACGATGACATTCAAAAAGAAGCCATCGTCCAAGCCATTACCAATCC
GCTTTTCATTCTGACAGGCGGACCAGGGACTGGAAAAACAACGGTTATCAACGGTATTATCGCGGTCTATGCCATCTTGC
ATAAGATTGACCTGACTAGCAACCGAGAAGAATGCCCAGTCCTCCTAGCCGCTCCAACTGGACGAGCAGCCAGACGGATG
AATGAATTGACAGGTCTGCCTTCCGCCACCATCCACCGCCACCTCGGTCTGGTAGAAGGACAGGAAGAATCCTACCGAGA
TGATTACCTCGAAGCTGACTTCATCATCGTGGATGAGTTTTCTATGGTCGACACTTGGTTGGCAAACCAGCTCTTCCAGA
ACATCTCCTCCCAGACCCAAGTTCTGATTGTTGGCGATGCGGAGCAATTACCTTCCGTCAGTCCCGGTCAGGTCCTTGCT
GACCTCTTGAAAATTGATAAGCTACCCAGCATCACTCTAGAACGTATCTATCGTCAATCCGATGATTCGACCATTGTTAC
CCTAGCCAGTCAGATTCGCCAAGGGGCTCTGCCGAGCGATTTCCGTGAGAAAAAGGCTGACCGCTCCTATTTTGAAGCCC
AAAACGAACAAATTCCAGCCCTGATTGAGCGCATTGTCGGCGCAGCCATCAAGTCGGGCATCCCTGCAAACGAAGTCCAA
ATCCTCGCTCCCATGTACCGTGGTGTCGCAGGCATCGACCAGCTCAACACCATGACCCAGGCCCTGCTCAATCCACTGGA
AGAGGGAGAGTTAGAATTCCTCCACAATGAGCAAGCCTTCCGCCAAGGCGACCGGGTCATTCATCTAGTCAACGACGCCG
AAGCCAATGTCTTCAATGGCGACTTGGGCTACATCACCGACCTCCTGCCTGCCAAGTACACCGACTCCAAGCAGGACGAG
ATTACCATCAACTTCGACGGTAGCGAGGTCACCTATCCACGCAATGAATGGTACAAGATTACCCTGGCCTATGCCATGTC
CATCCACAAGTCCCAAGGCAGCGAGTTTCAGGTCGTCATCCTTCCCATCACGCGCACCAGCCACCGCATGCTCCAGCGCA
ATCTGGTCTACACCGCCATCACCCGCTCCAAGAGCAAGCTCATCCTCCTGGGCGAAATCTCCGCCTTTGACTATGCCGTC
AAAAATGCTGGCACCGTCCGAAAAACCTATCTGGTCCCACGTTTCCAAGGAGAAATGGCAGAGCTGGGCAGCAAGGAGGC
TTTGACTGAAAAAGACGAAAGCAAAACAACTGAAACCACGCAAACCCAGCCCCCTACACAGCCAGACAGGAAAGAACAGG
TTGAAGCAGTCAAAGAAAACAACCAACAACTCTCCCTTCTTGATCAAGACCAGCCAGAAAAAACAAGTCCCCAACCCACA
GAATACATTTTGACTGTAGATAACCTACTAACCATCGACCCCATGATTGGCATAGAACAGGCAGATATTGAAGAATTTTT
TAAAGCATAA

Domains

Predicted by InterProScan.

AAA domain (AAA_30)

(332-529)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(575-645)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(663-710)

Helix-hairpin-helix containing domain (HHH_RecD2)

(148-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

41.711

91.677

0.382