Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   RMP65_RS05150 Genome accession   NZ_CP135089
Coordinates   1040046..1041782 (-) Length   578 a.a.
NCBI ID   WP_109371466.1    Uniprot ID   -
Organism   Streptococcus suis strain ID34567     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1035046..1046782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMP65_RS05135 (RMP65_05135) - 1035894..1037180 (-) 1287 WP_313680937.1 homoserine dehydrogenase -
  RMP65_RS05140 (RMP65_05140) - 1037285..1038208 (+) 924 WP_313680938.1 polysaccharide deacetylase family protein -
  RMP65_RS05145 (RMP65_05145) rcrQ 1038268..1040037 (-) 1770 WP_313680939.1 ABC transporter ATP-binding protein Regulator
  RMP65_RS05150 (RMP65_05150) rcrP 1040046..1041782 (-) 1737 WP_109371466.1 ABC transporter ATP-binding protein Regulator
  RMP65_RS05155 (RMP65_05155) - 1041858..1042100 (-) 243 WP_012028079.1 KH domain-containing protein -
  RMP65_RS05160 (RMP65_05160) rpsP 1042122..1042394 (-) 273 WP_002940682.1 30S ribosomal protein S16 -
  RMP65_RS05165 (RMP65_05165) - 1042519..1042827 (-) 309 WP_029171816.1 DUF4298 domain-containing protein -
  RMP65_RS05170 (RMP65_05170) pcp 1042827..1043474 (-) 648 WP_024411282.1 pyroglutamyl-peptidase I -
  RMP65_RS05175 (RMP65_05175) - 1043471..1044232 (-) 762 WP_024384449.1 class I SAM-dependent methyltransferase -
  RMP65_RS05180 (RMP65_05180) - 1044303..1044617 (-) 315 WP_024384448.1 hypothetical protein -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 65048.36 Da        Isoelectric Point: 5.1916

>NTDB_id=808938 RMP65_RS05150 WP_109371466.1 1040046..1041782(-) (rcrP) [Streptococcus suis strain ID34567]
MNLIWTYLKKYPKWIALDLLGAFLFVVVNLGLPTFLARMIDQGITKNDVSQLYFWAGMMGLIVLLGIVGRVTLAYAAGKL
TTNIVKDIRNDLYEKIQDYSHHEYEQIGVSSLVARMTNDAFVLMQFAEMVLKLGIITPLMMIASVIMTLVTSPSLAWTVA
VAMPFLVIVIFYVATKTRPLSEKQQKRLDTINQYVRENLMGLRVIRAFTREEFQEERFESVNEEYTDISKKLFNLTGLTE
PLFVQIIIAMIVAIVWFALAPLQTGSLQIGDLVAFIEYSFHALFSFLLFANLFNMYPRMSVSSQRIQEVLDMPISISKNE
DGITETDTRGYLEFENVTFAYPGETESPVLHNISFKAKPGETIAFIGSTGSGKSSLVNLIPRFYDVTLGRILVDGVDVRR
YNLKALRSKIGFIPQKALLFTGTIAENLKYGKMDASLAELHDATDVAQAKEFIESKEEKFDTHLAEGGSNLSGGQKQRLS
IARAIVKQPDIYIFDDSFSALDYKTDAILRSRLKEVTENATVLIVAQRVGTIMDADQIIVLNEGEIVGRGTHNELMESNE
IYREIANSQLNRQSLTEE

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=808938 RMP65_RS05150 WP_109371466.1 1040046..1041782(-) (rcrP) [Streptococcus suis strain ID34567]
ATGAATCTGATTTGGACCTACTTAAAAAAATATCCTAAGTGGATTGCCTTGGACTTGTTGGGGGCCTTCTTGTTTGTAGT
GGTAAACTTGGGCTTGCCGACTTTTTTGGCTAGGATGATTGACCAAGGAATTACAAAGAACGATGTTAGTCAGCTCTATT
TCTGGGCGGGGATGATGGGACTGATTGTCCTGCTCGGTATTGTTGGCCGAGTGACACTTGCCTATGCAGCTGGAAAGTTG
ACGACCAATATCGTCAAAGATATTCGAAATGATCTGTATGAGAAAATTCAGGACTACTCTCATCACGAGTATGAGCAGAT
TGGTGTTTCTTCTCTAGTTGCTCGTATGACAAATGATGCTTTTGTCTTGATGCAGTTTGCGGAGATGGTATTGAAGCTGG
GAATTATCACTCCCTTGATGATGATTGCTTCTGTTATCATGACCTTGGTAACCAGTCCAAGTCTGGCTTGGACAGTCGCA
GTAGCCATGCCGTTTCTTGTTATCGTTATTTTCTATGTGGCAACCAAAACTCGTCCTCTTTCTGAAAAGCAACAAAAACG
TTTGGACACGATCAACCAATATGTTCGTGAAAATCTCATGGGCTTACGTGTCATTCGTGCCTTTACTCGTGAGGAGTTTC
AAGAGGAGCGCTTTGAGTCGGTCAATGAAGAATATACCGATATTTCCAAAAAACTCTTTAATCTGACTGGATTGACAGAG
CCGCTCTTTGTCCAGATTATCATTGCTATGATTGTGGCCATTGTCTGGTTCGCATTGGCTCCTTTGCAAACAGGCAGTCT
GCAAATCGGTGATTTGGTAGCCTTTATCGAATATAGTTTCCACGCGCTTTTCTCATTCTTACTCTTTGCTAACTTGTTTA
ACATGTATCCACGTATGTCCGTATCGAGCCAACGGATTCAGGAAGTCTTGGACATGCCCATTTCCATTTCTAAGAATGAA
GATGGGATTACTGAAACAGACACTCGTGGTTATTTGGAATTTGAAAATGTAACTTTTGCCTATCCTGGTGAAACTGAATC
GCCTGTTCTCCACAATATTTCATTTAAGGCTAAGCCTGGAGAAACCATTGCCTTTATTGGTTCAACTGGTTCTGGTAAGT
CTTCCTTGGTCAACTTGATTCCACGTTTCTATGATGTGACACTTGGTCGTATCTTGGTGGACGGTGTGGATGTCAGACGC
TACAATCTAAAGGCACTCCGCAGCAAGATTGGTTTTATTCCGCAGAAAGCTCTGCTATTTACCGGAACTATCGCGGAAAA
CTTAAAGTACGGTAAGATGGATGCTAGTCTTGCTGAACTTCATGATGCGACGGATGTGGCTCAGGCTAAGGAGTTTATCG
AGAGTAAGGAAGAAAAATTCGACACCCATCTAGCAGAAGGCGGAAGCAACCTGTCAGGCGGGCAAAAGCAACGTTTGTCC
ATTGCGCGTGCCATTGTCAAACAGCCCGATATTTATATCTTTGATGATTCTTTCTCAGCCTTGGATTATAAGACGGATGC
GATTTTGAGGAGTCGTTTGAAGGAAGTGACAGAAAATGCGACGGTGCTGATTGTTGCCCAACGTGTCGGAACCATTATGG
ATGCTGACCAGATTATCGTGCTAAACGAAGGTGAGATCGTTGGTCGTGGCACCCACAATGAATTGATGGAAAGCAATGAG
ATTTACCGAGAAATTGCCAACTCTCAACTTAATCGTCAATCGCTAACAGAAGAATAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(20-280)

ABC transporter (ABC_tran)

(350-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.333

100

0.398