Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   RMP65_RS01100 Genome accession   NZ_CP135089
Coordinates   190809..193298 (-) Length   829 a.a.
NCBI ID   WP_254457640.1    Uniprot ID   -
Organism   Streptococcus suis strain ID34567     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 185809..198298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMP65_RS01075 (RMP65_01075) dinB 186638..187705 (+) 1068 WP_105134522.1 DNA polymerase IV -
  RMP65_RS01080 (RMP65_01080) - 187748..188167 (+) 420 WP_105119313.1 Rrf2 family transcriptional regulator -
  RMP65_RS01085 (RMP65_01085) - 188304..188930 (+) 627 WP_109371063.1 NAD(P)-dependent oxidoreductase -
  RMP65_RS01090 (RMP65_01090) - 189035..189955 (+) 921 WP_254457639.1 1-phosphofructokinase family hexose kinase -
  RMP65_RS01095 (RMP65_01095) - 190003..190641 (+) 639 WP_172699633.1 endonuclease III domain-containing protein -
  RMP65_RS01100 (RMP65_01100) recD/recD2/recDB 190809..193298 (-) 2490 WP_254457640.1 ATP-dependent RecD-like DNA helicase Machinery gene
  RMP65_RS01105 (RMP65_01105) lepB 193504..194133 (-) 630 WP_053867265.1 signal peptidase I -
  RMP65_RS01110 (RMP65_01110) rnhC 194143..195033 (-) 891 WP_024400395.1 ribonuclease HIII -
  RMP65_RS01115 (RMP65_01115) - 195118..196101 (+) 984 WP_254457641.1 Gfo/Idh/MocA family protein -
  RMP65_RS01120 (RMP65_01120) - 196450..197583 (+) 1134 WP_254457642.1 LysM domain-containing protein -

Sequence

Protein


Download         Length: 829 a.a.        Molecular weight: 92921.00 Da        Isoelectric Point: 4.5732

>NTDB_id=808909 RMP65_RS01100 WP_254457640.1 190809..193298(-) (recD/recD2/recDB) [Streptococcus suis strain ID34567]
MNEVYFTGTIDRIIFENPSNFYKILLLEIEETDADYDDYEIIVAGTIADVIEGEDYRFYGNLVTHPKYGQQLQISRYERS
KPTSAGLVKYFSSDHFKGIGRKTAEKIVELYGEDTIDKILAEPEKLTQITGLSSKNRQAFVEKLRLNYGTELILAKLAEY
GIPNKLAFQIQDQYKEKTLQIIEENPYQLVEDVQGLGFTIADRIAENLGIASDSPQRFRAGMLFSLIHRSMETGDTYVEA
RDLLEATLELLEKSRHTELDPAAVAHELTGLIADDKVQQEGTKIFDNSLYFAEHGIHKNLTRLMGKNGFKPFPRADVEAA
IAELESMSSLTYDDIQKEAIVQAITNPLFILTGGPGTGKTTVINGIIAVYAILHKIDLTRNREECPVLLAAPTGRAARRM
NELTGLPSATIHRHLGLVEGQEESYRDDYLDADFIIVDEFSMVDTWLANQLFQNISSQTQVLIVGDAEQLPSVSPGQVLA
DLLKIDKLPSITLERIYRQSDDSTIVTLASQIRQGALPSDFREKKADRSYFEAQNEQIPALIERIVGAAIKSGIPANEVQ
ILAPMYRGAAGIDQLNTMSQALLNPLEDGELEFLHNEQAFRQGDRVIHLVNDAEANVFNGDLGYITDLLPAKYTDSKQDE
ITINFDGSEVTYPRNEWYKITLAYAMSIHKSQGSEFQVVILPITRTSHRMLQRNLVYTAITRSKSKLILIGEISAFDYAV
KNAGTLRKTYLVPRFQGEMAEQDSKESLTENNESKTATATKTQPPAQSGKPKQTEPVTENSQQLSLLDQDQPEKTSLQPR
EYILTVDNLLTIDPMIGIDQADIEEFFKA

Nucleotide


Download         Length: 2490 bp        

>NTDB_id=808909 RMP65_RS01100 WP_254457640.1 190809..193298(-) (recD/recD2/recDB) [Streptococcus suis strain ID34567]
ATGAACGAAGTGTATTTTACCGGTACTATTGACCGGATTATTTTTGAAAATCCTAGTAATTTTTATAAGATCCTTCTCCT
TGAAATCGAGGAGACAGACGCAGACTATGACGACTACGAAATTATTGTGGCCGGAACGATTGCCGATGTCATCGAAGGAG
AAGACTATCGTTTCTATGGCAATCTGGTCACCCATCCCAAGTATGGTCAGCAGCTGCAAATTTCGCGTTACGAACGCAGC
AAGCCCACTTCTGCCGGACTTGTCAAGTATTTCTCCAGCGACCATTTCAAGGGAATTGGACGTAAAACAGCGGAAAAAAT
CGTTGAGCTCTATGGCGAGGATACCATTGATAAGATTTTAGCTGAACCTGAAAAACTAACCCAAATCACAGGACTATCCA
GCAAGAACAGGCAGGCATTTGTCGAAAAACTCCGCCTCAATTATGGAACCGAGCTGATCTTGGCAAAACTAGCTGAGTAT
GGCATTCCCAATAAATTGGCCTTTCAAATCCAAGACCAGTATAAGGAAAAAACACTTCAGATTATTGAAGAAAATCCCTA
TCAACTGGTCGAAGATGTCCAGGGCCTCGGCTTCACCATTGCCGATAGGATTGCGGAAAACCTGGGAATTGCCAGCGATT
CCCCCCAACGCTTTCGGGCAGGTATGCTCTTTAGCCTCATCCATCGCTCCATGGAAACAGGCGATACCTATGTGGAGGCC
AGAGACTTGCTGGAAGCAACCCTTGAACTGCTGGAAAAATCCCGCCATACAGAACTGGACCCTGCCGCAGTTGCTCACGA
GTTGACAGGACTGATTGCAGACGACAAGGTACAGCAAGAAGGCACAAAGATTTTTGACAACAGCCTCTACTTTGCCGAAC
ATGGTATCCATAAAAACTTGACCCGCCTGATGGGAAAAAATGGTTTCAAGCCCTTCCCACGCGCAGACGTTGAGGCTGCC
ATAGCAGAGCTGGAAAGTATGTCTTCCCTAACCTACGATGACATTCAAAAAGAAGCCATTGTCCAAGCTATTACCAATCC
GCTTTTCATTCTGACAGGTGGACCAGGGACTGGAAAAACAACGGTTATCAACGGTATTATCGCGGTCTATGCCATCTTGC
ATAAGATTGACCTGACTCGCAACCGAGAAGAATGCCCTGTCCTCCTAGCCGCTCCAACTGGACGAGCAGCCAGACGGATG
AATGAATTGACAGGTTTGCCTTCCGCCACCATCCACCGCCATCTCGGTCTGGTAGAAGGACAGGAAGAATCCTACCGTGA
TGATTATTTGGATGCCGACTTTATCATCGTGGATGAGTTTTCTATGGTAGATACTTGGTTGGCAAACCAGCTCTTCCAGA
ACATCTCCTCCCAAACCCAAGTCCTGATTGTCGGCGATGCGGAGCAATTGCCTTCTGTCAGTCCCGGTCAGGTCCTAGCT
GACCTCTTGAAAATTGACAAGCTACCCAGCATCACTCTGGAACGCATCTACCGTCAATCCGATGATTCGACCATTGTTAC
CCTAGCCAGCCAAATCCGACAAGGAGCTCTACCTAGCGATTTCCGTGAGAAAAAGGCTGACCGCTCCTATTTTGAAGCGC
AAAACGAACAAATTCCAGCCCTGATTGAACGCATTGTCGGAGCAGCCATCAAGTCAGGTATCCCTGCAAACGAGGTCCAA
ATCCTCGCTCCCATGTACCGTGGTGCCGCAGGCATTGACCAACTTAACACCATGAGCCAGGCCCTGCTCAATCCCCTAGA
AGACGGAGAACTGGAGTTCCTCCACAACGAGCAAGCCTTCCGCCAAGGCGACCGGGTCATCCACCTAGTCAACGATGCCG
AGGCCAATGTCTTCAATGGTGATTTGGGCTACATCACCGACCTCCTGCCTGCCAAGTATACCGACTCCAAGCAGGACGAG
ATTACCATCAACTTCGATGGTAGCGAGGTCACCTATCCCCGTAACGAATGGTACAAGATTACCCTGGCCTATGCCATGTC
CATCCACAAGTCCCAAGGCAGTGAGTTCCAGGTCGTCATCCTCCCCATCACACGCACCAGCCACCGCATGCTCCAGCGCA
ACCTGGTCTACACCGCCATCACCCGCTCCAAGAGCAAGCTCATCCTCATAGGCGAAATCTCCGCCTTCGACTACGCCGTC
AAAAACGCCGGAACCCTCCGCAAAACCTATCTGGTCCCACGTTTCCAAGGGGAAATGGCAGAGCAGGACAGCAAGGAAAG
CCTGACAGAAAACAACGAAAGCAAAACAGCTACAGCCACGAAAACCCAGCCACCTGCTCAATCGGGTAAGCCAAAACAAA
CAGAGCCAGTAACAGAAAACAGCCAGCAACTATCCCTTCTTGACCAAGACCAGCCAGAAAAAACAAGTCTCCAACCCAGA
GAATATATTCTGACCGTGGACAACCTGCTAACCATCGACCCCATGATTGGCATAGATCAGGCAGATATTGAAGAGTTTTT
TAAAGCATAA

Domains

Predicted by InterProScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(575-645)

Helix-hairpin-helix containing domain (HHH_RecD2)

(148-237)

AAA domain (AAA_30)

(332-529)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(663-710)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

41.27

91.194

0.376