Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   RMP67_RS11485 Genome accession   NZ_CP135087
Coordinates   2357825..2359108 (+) Length   427 a.a.
NCBI ID   WP_313920837.1    Uniprot ID   -
Organism   Streptococcus suis strain ID26102     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2352825..2364108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMP67_RS11455 (RMP67_11455) - 2353389..2354135 (-) 747 WP_313920833.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  RMP67_RS11460 (RMP67_11460) prmA 2354137..2355090 (-) 954 WP_029752553.1 50S ribosomal protein L11 methyltransferase -
  RMP67_RS11465 (RMP67_11465) - 2355137..2356297 (-) 1161 WP_398584286.1 P-loop ATPase, Sll1717 family -
  RMP67_RS11470 (RMP67_11470) - 2356302..2356652 (-) 351 WP_313920835.1 hypothetical protein -
  RMP67_RS11475 (RMP67_11475) - 2356948..2357418 (-) 471 WP_024400772.1 DUF3013 family protein -
  RMP67_RS11480 (RMP67_11480) - 2357420..2357755 (-) 336 WP_313920836.1 MazG nucleotide pyrophosphohydrolase domain-containing protein -
  RMP67_RS11485 (RMP67_11485) rarA 2357825..2359108 (+) 1284 WP_313920837.1 replication-associated recombination protein A Machinery gene
  RMP67_RS11490 (RMP67_11490) - 2359185..2359601 (+) 417 WP_044750666.1 hypothetical protein -
  RMP67_RS11505 (RMP67_11505) nrdG 2360188..2360745 (-) 558 WP_313920838.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  RMP67_RS11510 (RMP67_11510) - 2360932..2361426 (-) 495 WP_023371818.1 GNAT family N-acetyltransferase -
  RMP67_RS11515 (RMP67_11515) - 2361428..2362774 (-) 1347 WP_313920839.1 5'-nucleotidase C-terminal domain-containing protein -
  RMP67_RS11520 (RMP67_11520) - 2362776..2362910 (-) 135 WP_002939130.1 hypothetical protein -

Sequence

Protein


Download         Length: 427 a.a.        Molecular weight: 47186.87 Da        Isoelectric Point: 6.2923

>NTDB_id=808883 RMP67_RS11485 WP_313920837.1 2357825..2359108(+) (rarA) [Streptococcus suis strain ID26102]
MPANLALRMRPKSIDEVIGQEHLVSPGKIIRRMIDANMLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATTDNQKRL
QEIAEEAKFSGGLVLMLDEIHRLNKTKQDFLLPLLENGNIIMIGATTENPFFSILPAIRSRVQIFELQPLKTSHIRQALE
LALTDSERGFDFPVTIESEALDFLTNATNGDLRAAYNSLELAVLSTKECDDGSRHIDLDAVENSLQKSYISMDKNGDAHY
DILSALQKSIRGSDVNASLHYAARLIEAEDLPSLARRLTVIAYEDIGLANPEAQIHTVTALEAAQKIGFPEARILIANVV
IDLALSPKSNSAYLAMDAALADLRKNGHLPIPNHLRDGHYAGSKELGNAIGYQYPHAYPEKWVDQQYLPDKLLAADYFTA
NDTGKYERALGMTQEKIKQLKQTKKNV

Nucleotide


Download         Length: 1284 bp        

>NTDB_id=808883 RMP67_RS11485 WP_313920837.1 2357825..2359108(+) (rarA) [Streptococcus suis strain ID26102]
ATGCCAGCCAATCTCGCCCTTCGTATGCGGCCCAAATCCATTGATGAGGTCATCGGTCAGGAACACCTGGTCAGTCCTGG
AAAGATTATCCGCCGCATGATTGATGCCAATATGCTGTCGTCCATGATTCTCTACGGTCCGCCAGGGATTGGCAAGACCT
CGATTGCGTCCGCCATTGCTGGCACAACCAAGTATGCCTTTCGGACCTTTAATGCCACGACCGACAACCAAAAACGCCTG
CAGGAGATTGCCGAAGAAGCCAAATTTTCTGGCGGTCTGGTGCTCATGCTCGATGAAATCCACCGCCTTAACAAGACCAA
GCAGGATTTCCTGCTCCCTCTTTTGGAAAATGGCAATATCATCATGATTGGAGCAACGACGGAAAATCCATTTTTCTCTA
TTTTGCCTGCCATTCGCAGTCGGGTGCAGATTTTTGAATTGCAACCTCTGAAAACCAGCCATATCCGACAGGCCTTGGAG
CTAGCTCTGACAGACAGTGAACGTGGTTTTGACTTCCCAGTCACCATTGAGTCTGAGGCTCTGGATTTTCTGACAAATGC
GACCAACGGTGACCTTCGTGCCGCCTACAATTCGCTAGAACTAGCTGTACTTTCGACCAAGGAATGTGACGACGGTAGCC
GCCACATTGATCTGGACGCCGTGGAAAATAGCCTGCAAAAGTCCTACATCAGCATGGACAAGAACGGCGATGCCCACTAC
GACATCCTCTCCGCCCTGCAAAAATCCATTCGGGGTAGCGATGTCAATGCCAGCCTCCACTACGCCGCTCGTTTGATTGA
GGCCGAAGATCTGCCTAGTCTGGCTCGTCGCTTGACGGTCATTGCCTACGAAGACATCGGCTTGGCCAATCCAGAGGCTC
AGATTCATACGGTGACGGCCCTTGAAGCCGCCCAGAAAATTGGCTTTCCAGAGGCACGCATTTTGATTGCCAATGTGGTG
ATTGATTTGGCTCTTTCTCCCAAGTCCAACTCTGCCTATCTGGCTATGGATGCAGCTCTGGCTGATTTGCGAAAGAACGG
TCATCTGCCTATTCCAAATCACCTGCGAGACGGTCACTATGCTGGTAGTAAGGAGCTGGGAAATGCCATTGGTTACCAGT
ATCCGCATGCCTATCCTGAAAAATGGGTGGACCAGCAATACCTGCCCGACAAGTTACTGGCTGCGGACTACTTCACCGCC
AACGACACCGGCAAATACGAGCGTGCCTTGGGTATGACCCAAGAAAAAATTAAGCAGCTAAAACAGACCAAGAAAAATGT
GTAA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(173-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.33

97.892

0.581