Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   P4829_RS08955 Genome accession   NZ_CP120846
Coordinates   1732820..1733599 (+) Length   259 a.a.
NCBI ID   WP_003328951.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain MBLB1156     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1727820..1738599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4829_RS08935 (P4829_08935) trmFO 1728515..1729822 (+) 1308 WP_063637671.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  P4829_RS08940 (P4829_08940) xerC 1729889..1730803 (+) 915 WP_010788602.1 tyrosine recombinase XerC -
  P4829_RS08945 (P4829_08945) clpQ 1730817..1731362 (+) 546 WP_003328953.1 ATP-dependent protease subunit ClpQ -
  P4829_RS08950 (P4829_08950) hslU 1731370..1732782 (+) 1413 WP_255265367.1 HslU--HslV peptidase ATPase subunit -
  P4829_RS08955 (P4829_08955) codY 1732820..1733599 (+) 780 WP_003328951.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  P4829_RS08960 (P4829_08960) flgB 1734020..1734409 (+) 390 WP_010788604.1 flagellar basal body rod protein FlgB -
  P4829_RS08965 (P4829_08965) flgC 1734409..1734858 (+) 450 WP_010788605.1 flagellar basal body rod protein FlgC -
  P4829_RS08970 (P4829_08970) fliE 1734869..1735189 (+) 321 WP_010788606.1 flagellar hook-basal body complex protein FliE -
  P4829_RS08975 (P4829_08975) fliF 1735233..1736840 (+) 1608 WP_035175119.1 flagellar basal-body MS-ring/collar protein FliF -
  P4829_RS08980 (P4829_08980) fliG 1736853..1737869 (+) 1017 WP_003328945.1 flagellar motor switch protein FliG -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29042.26 Da        Isoelectric Point: 4.6017

>NTDB_id=808843 P4829_RS08955 WP_003328951.1 1732820..1733599(+) (codY) [Bacillus atrophaeus strain MBLB1156]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=808843 P4829_RS08955 WP_003328951.1 1732820..1733599(+) (codY) [Bacillus atrophaeus strain MBLB1156]
ATGGCTTTATTACAAAAAACAAGAATTATTAATTCCATGCTTCAAGCTGCGGCAGGGAAACCGGTAAACTTTAAAGAAAT
GGCGGAAACACTTCGGGATGTTATTGATTCAAATATTTTCGTCGTAAGCCGCAGAGGAAAGCTGTTAGGCTATTCTATTA
ATCAGCAAATTGAGAACGACCGTATGAAAAAAATGCTTGAAGACCGTCAGTTTCCGGAAGAATACACAAAAAACCTATTT
AATATTCCGGAGACTTCTTCTAATCTGGATATTAACAGTGAGTACACAGCGTTCCCGGTCGAAAACAGAGATCTGTTCCA
AGCTGGTTTAACAACAATTGTACCAATTATCGGAGGCGGAGAAAGACTTGGAACGCTTATTCTTTCACGCTTGCAGGATC
AATTTGAGGACGATGATCTAATTCTTGCTGAATACGGGGCGACCGTTGTAGGAATGGAAATCCTCAGAGAAAAAGCAGAA
GAAATTGAAGAAGAAGCACGCAGCAAAGCTGTAGTTCAAATGGCGATCAGTTCTCTTTCTTACAGTGAGCTTGAAGCGAT
TGAGCACATCTTTGAAGAACTTGACGGAAACGAAGGCCTGCTTGTGGCAAGTAAAATTGCAGACCGCGTCGGCATTACCC
GTTCCGTGATTGTCAATGCACTCAGAAAGCTTGAAAGTGCCGGTGTCATCGAATCGAGATCACTCGGAATGAAGGGAACT
TATATTAAAGTCCTTAACAACAAGTTCTTGATCGAATTAGAAAACCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471