Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   P4829_RS08925 Genome accession   NZ_CP120846
Coordinates   1725276..1726175 (+) Length   299 a.a.
NCBI ID   WP_010788599.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain MBLB1156     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1720276..1731175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4829_RS08905 (P4829_08905) - 1720926..1722674 (+) 1749 WP_063637669.1 hypothetical protein -
  P4829_RS08910 (P4829_08910) - 1722671..1722952 (+) 282 WP_010788597.1 FlhB-like flagellar biosynthesis protein -
  P4829_RS08915 (P4829_08915) sucC 1723126..1724283 (+) 1158 WP_063637670.1 ADP-forming succinate--CoA ligase subunit beta -
  P4829_RS08920 (P4829_08920) sucD 1724312..1725214 (+) 903 WP_003328958.1 succinate--CoA ligase subunit alpha -
  P4829_RS08925 (P4829_08925) dprA 1725276..1726175 (+) 900 WP_010788599.1 DNA-processing protein DprA Machinery gene
  P4829_RS08930 (P4829_08930) topA 1726364..1728439 (+) 2076 WP_010788600.1 type I DNA topoisomerase -
  P4829_RS08935 (P4829_08935) trmFO 1728515..1729822 (+) 1308 WP_063637671.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  P4829_RS08940 (P4829_08940) xerC 1729889..1730803 (+) 915 WP_010788602.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 33219.31 Da        Isoelectric Point: 9.5634

>NTDB_id=808842 P4829_RS08925 WP_010788599.1 1725276..1726175(+) (dprA) [Bacillus atrophaeus strain MBLB1156]
MDQASACLLICSINRLLSPSLLLKWWKADPSLSFKTDLHPIHTITSGKIKAAALKTQIEKEYDKLQEQLSDYQRRGIKVI
PITSHQYPTWLKTIYDPPPVLFAKGNENLLIKGRKIGVVGTRNPTAYGKKAVFHLTKELAGNQWIIVSGLAAGIDGLSHR
ACIRAKGYTIGVIAGGFHHIYPRENQQLAEYMAKYHLLLSEHPPETKPQKWHFPMRNRLISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFDPYSGGPIKLIQEGAKSVQSAEDIYSELSEGNVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=808842 P4829_RS08925 WP_010788599.1 1725276..1726175(+) (dprA) [Bacillus atrophaeus strain MBLB1156]
TTGGATCAGGCGTCTGCCTGTTTACTCATTTGCAGCATTAACCGTTTATTATCCCCGTCTCTTCTATTAAAATGGTGGAA
GGCTGATCCGTCTCTTTCTTTTAAGACTGATCTGCACCCAATACACACCATCACTTCCGGTAAAATAAAAGCCGCCGCGC
TTAAAACTCAAATAGAGAAAGAATATGATAAGCTTCAAGAACAGCTGTCTGACTATCAACGGCGAGGTATCAAAGTCATT
CCGATCACTTCACATCAATATCCGACATGGCTGAAAACGATCTATGATCCGCCTCCCGTTTTGTTTGCCAAAGGGAATGA
GAACCTGCTTATAAAAGGCCGGAAAATTGGAGTGGTAGGTACGCGAAATCCTACCGCATATGGCAAAAAAGCAGTTTTTC
ATCTTACAAAAGAGCTTGCAGGCAACCAGTGGATCATTGTAAGCGGACTCGCGGCCGGAATAGACGGTTTGTCCCATAGA
GCCTGCATCAGGGCAAAAGGGTATACAATCGGTGTCATAGCAGGCGGTTTTCATCATATATATCCCCGAGAAAATCAGCA
GTTAGCAGAATACATGGCGAAGTATCATCTGCTGCTGTCAGAACATCCACCGGAAACAAAACCCCAAAAATGGCATTTTC
CCATGAGAAACCGTTTAATAAGCGGGTTGTCCGAAGGCATAGTGGTAGTGCAAGGCAAAGAAAAAAGCGGTTCGTTAATC
ACTGCCTATCAAGCGCTTGACCAGGGCAGGGAGGTGTTTGCCGTGCCTGGTTCTATATTTGATCCATACTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCAAAATCTGTACAGTCCGCTGAGGATATTTACAGTGAGTTATCGGAGGGAAACGTTC
AATATACGGAACCCTTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

73.579

100

0.736