Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   RPQ07_RS30605 Genome accession   NZ_CP135086
Coordinates   6843060..6844151 (+) Length   363 a.a.
NCBI ID   WP_313947450.1    Uniprot ID   -
Organism   Streptomyces sp. AM8-1-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6838060..6849151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPQ07_RS30575 (RPQ07_30575) - 6838566..6839111 (+) 546 WP_313947444.1 hypothetical protein -
  RPQ07_RS30580 (RPQ07_30580) pdxS 6839321..6840244 (+) 924 WP_313947445.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
  RPQ07_RS30585 (RPQ07_30585) pdxT 6840244..6840834 (+) 591 WP_313947446.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  RPQ07_RS30590 (RPQ07_30590) - 6840898..6841650 (+) 753 WP_313947447.1 YebC/PmpR family DNA-binding transcriptional regulator -
  RPQ07_RS30595 (RPQ07_30595) ruvC 6841785..6842315 (+) 531 WP_313947448.1 crossover junction endodeoxyribonuclease RuvC -
  RPQ07_RS30600 (RPQ07_30600) ruvA 6842312..6842929 (+) 618 WP_313947449.1 Holliday junction branch migration protein RuvA -
  RPQ07_RS30605 (RPQ07_30605) ruvB 6843060..6844151 (+) 1092 WP_313947450.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  RPQ07_RS30610 (RPQ07_30610) yajC 6844317..6844796 (+) 480 WP_313947451.1 preprotein translocase subunit YajC -
  RPQ07_RS30615 (RPQ07_30615) secD 6844944..6846665 (+) 1722 WP_313947452.1 protein translocase subunit SecD -
  RPQ07_RS30620 (RPQ07_30620) secF 6846667..6847773 (+) 1107 WP_313947453.1 protein translocase subunit SecF -
  RPQ07_RS30625 (RPQ07_30625) - 6847770..6848312 (+) 543 WP_313947454.1 adenine phosphoribosyltransferase -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 38726.33 Da        Isoelectric Point: 4.8117

>NTDB_id=808790 RPQ07_RS30605 WP_313947450.1 6843060..6844151(+) (ruvB) [Streptomyces sp. AM8-1-1]
MNWDDITPAPADEAPYAADGRLVGPSADGEDQAVEAALRPKSLDEFVGQERVREQLDLVLKAALARGATADHVLLSGAPG
LGKTTLSMIIAAEMKAPIRITSGPAIQHAGDLAAILSSLQEGEVLFLDEIHRMSRPAEEMLYMAMEDFRVDVIVGKGPGA
TAIPLELPPFTLVGATTRAGLLPPPLRDRFGFTAHMEFYDPTELERVIHRSAQLLDLEIESDGAAEIAGRSRGTPRIANR
LLRRVRDYAQVKADGLITRDIAAAALKVYEVDARGLDRLDRAVLQALLKLFGGGPVGLSTLAVAVGEERETVEEVAEPFL
VREGLLARTPRGRVATPAAWAHLGLVPPQQAPGASGQPGLFGT

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=808790 RPQ07_RS30605 WP_313947450.1 6843060..6844151(+) (ruvB) [Streptomyces sp. AM8-1-1]
GTGAACTGGGACGACATCACCCCGGCCCCCGCCGACGAAGCGCCCTATGCCGCCGACGGGCGGCTCGTCGGCCCCTCCGC
CGACGGCGAGGACCAGGCCGTCGAGGCGGCGCTGCGGCCGAAGTCCCTCGACGAGTTCGTGGGCCAGGAGAGGGTGCGCG
AGCAGCTCGACCTGGTCCTCAAGGCCGCTCTCGCCCGTGGCGCCACCGCCGACCACGTCCTGCTCTCCGGTGCCCCCGGG
CTCGGCAAGACCACCCTGTCCATGATCATCGCCGCTGAGATGAAGGCCCCGATCCGCATCACCTCGGGCCCCGCCATCCA
GCACGCCGGCGACCTGGCGGCGATCCTCTCCTCCCTCCAGGAGGGCGAGGTCCTCTTCCTCGACGAGATCCACCGGATGT
CCCGGCCCGCCGAGGAAATGCTCTACATGGCCATGGAGGACTTCCGTGTCGACGTCATCGTCGGCAAGGGACCCGGGGCC
ACCGCCATCCCGCTGGAGCTGCCGCCGTTCACCCTGGTCGGCGCCACCACCAGGGCCGGACTGCTGCCCCCGCCGCTGCG
TGACCGGTTCGGTTTCACCGCGCACATGGAGTTCTACGACCCCACCGAGCTGGAACGCGTCATCCACCGCTCCGCCCAGC
TCCTCGACCTGGAGATCGAGTCCGACGGCGCCGCCGAGATCGCCGGCCGCTCCCGTGGCACGCCCCGCATCGCCAACCGC
CTGCTGCGCCGCGTACGCGACTACGCGCAGGTCAAGGCGGACGGACTGATCACCCGGGACATCGCGGCCGCGGCACTCAA
GGTGTACGAGGTGGATGCCCGGGGCCTCGACCGTCTGGACCGGGCGGTCCTCCAGGCGCTGCTCAAGCTGTTCGGCGGCG
GCCCGGTGGGCCTGTCGACGCTCGCGGTGGCCGTGGGGGAGGAGCGGGAGACCGTGGAGGAGGTCGCCGAGCCCTTCCTC
GTACGGGAGGGACTGCTGGCCCGGACCCCGCGCGGACGGGTCGCGACCCCCGCCGCCTGGGCCCATCTCGGCCTCGTTCC
GCCGCAGCAGGCCCCCGGTGCAAGCGGACAACCGGGGCTGTTCGGGACGTGA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(274-343)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(38-196)

RuvB AAA lid domain (AAA_lid_4)

(199-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

53.172

91.185

0.485
  ruvB Synechocystis sp. PCC 6803

52.322

88.981

0.466
  ruvB Streptococcus pneumoniae R6

50.926

89.256

0.455
  ruvB Streptococcus pneumoniae D39

50.926

89.256

0.455
  ruvB Streptococcus pneumoniae TIGR4

50.926

89.256

0.455
  ruvB Helicobacter pylori 26695

51.815

83.471

0.433