Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   P4831_RS10955 Genome accession   NZ_CP120842
Coordinates   2145067..2146005 (-) Length   312 a.a.
NCBI ID   WP_023164597.1    Uniprot ID   A0AAQ0R465
Organism   Lactococcus lactis strain ZFM559     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2140067..2151005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4831_RS10930 frr 2140185..2140742 (-) 558 WP_004254618.1 ribosome recycling factor -
  P4831_RS10935 pyrH 2140954..2141670 (-) 717 WP_004254608.1 UMP kinase -
  P4831_RS10940 - 2141755..2142207 (-) 453 WP_010906263.1 hypothetical protein -
  P4831_RS10945 - 2142341..2143528 (-) 1188 WP_004254599.1 acetate kinase -
  P4831_RS10950 - 2143685..2144872 (-) 1188 WP_023164596.1 acetate kinase -
  P4831_RS10955 comYH 2145067..2146005 (-) 939 WP_023164597.1 class I SAM-dependent methyltransferase Machinery gene
  P4831_RS10960 - 2146093..2146344 (-) 252 WP_004254583.1 DUF3165 family protein -
  P4831_RS10965 typA 2146441..2148273 (-) 1833 WP_025016832.1 translational GTPase TypA -
  P4831_RS10970 - 2148461..2148919 (-) 459 WP_010906266.1 hypothetical protein -
  P4831_RS10975 - 2148935..2149708 (-) 774 WP_023164598.1 hypothetical protein -
  P4831_RS10980 - 2150045..2150671 (-) 627 WP_004254567.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34740.90 Da        Isoelectric Point: 4.4060

>NTDB_id=808790 P4831_RS10955 WP_023164597.1 2145067..2146005(-) (comYH) [Lactococcus lactis strain ZFM559]
MDMEKVAQGFELVVANIMLLSEKLGTDFYDAFVEQNAAFLDDTDQGIVELSVNNDKLRQLNLSNKEWQKLFQFVLLKGSQ
VAPLQPNHAMTPDAIGLIFNFIIEHLNKNSELRLIEFGSGMGNLAETLLVNLNKKVDYVGFEVDDLLLDLSASMAEVMGS
QAEFMQIDAVQKRLMEPADVVVSDLPIGFYPDDEVAKNFEVATTDGHTFAHHLLIEQSFNYLKEGSFAIFLAPEDLLTSP
QGPLLKEWISKHGSVMAIITLPKSLFNADAKAIYVLKKGPAAHATFAHPLSSLTDRESLEVFMEEFTKIVKL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=808790 P4831_RS10955 WP_023164597.1 2145067..2146005(-) (comYH) [Lactococcus lactis strain ZFM559]
ATGGATATGGAAAAAGTGGCTCAAGGTTTTGAGCTAGTTGTTGCAAATATTATGTTACTATCTGAGAAATTGGGTACAGA
TTTTTATGATGCTTTTGTAGAACAAAATGCTGCTTTTTTAGATGATACTGACCAAGGAATTGTTGAATTGTCAGTAAATA
ATGACAAACTTCGTCAGTTAAATTTATCAAATAAGGAGTGGCAAAAACTTTTTCAATTTGTTTTGTTGAAAGGGTCACAA
GTCGCACCACTTCAGCCCAATCATGCAATGACTCCGGATGCAATTGGTTTAATTTTTAATTTCATTATTGAACATCTTAA
TAAAAATTCTGAACTTCGTTTAATTGAATTTGGGTCTGGCATGGGTAATCTTGCTGAAACGCTTTTAGTTAATCTTAATA
AAAAGGTTGATTATGTAGGCTTTGAAGTTGATGATTTACTTTTAGATTTGTCTGCTTCAATGGCTGAAGTTATGGGGAGT
CAGGCTGAGTTCATGCAAATTGATGCAGTACAAAAGCGTTTGATGGAACCTGCAGACGTTGTTGTCAGTGATTTACCAAT
TGGTTTTTATCCGGATGATGAAGTTGCAAAGAATTTTGAAGTTGCGACTACTGACGGACATACTTTTGCTCATCATCTTT
TGATTGAGCAATCATTTAATTATTTAAAAGAGGGTTCTTTTGCCATTTTCCTAGCTCCAGAAGATTTACTGACAAGTCCT
CAAGGACCACTATTAAAGGAGTGGATTAGTAAACATGGAAGTGTGATGGCTATCATCACTTTACCAAAATCACTTTTTAA
TGCTGATGCTAAGGCGATTTATGTTTTGAAAAAGGGGCCGGCTGCACATGCAACTTTTGCTCACCCTTTGTCTTCACTGA
CAGACAGAGAAAGTTTAGAAGTCTTTATGGAAGAATTTACAAAAATTGTAAAATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

48.882

100

0.49
  comYH Streptococcus mutans UA159

48.562

100

0.487