Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   RPQ07_RS23980 Genome accession   NZ_CP135086
Coordinates   5322020..5324224 (+) Length   734 a.a.
NCBI ID   WP_313946236.1    Uniprot ID   -
Organism   Streptomyces sp. AM8-1-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5317020..5329224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPQ07_RS23955 (RPQ07_23955) - 5317396..5318562 (+) 1167 WP_313946231.1 dihydrodipicolinate synthase family protein -
  RPQ07_RS23960 (RPQ07_23960) - 5318559..5319389 (+) 831 WP_313946232.1 sugar phosphate isomerase/epimerase family protein -
  RPQ07_RS23965 (RPQ07_23965) - 5319505..5320110 (+) 606 WP_313946233.1 hypothetical protein -
  RPQ07_RS23970 (RPQ07_23970) - 5320202..5320756 (+) 555 WP_313946234.1 SigE family RNA polymerase sigma factor -
  RPQ07_RS23975 (RPQ07_23975) - 5320753..5321427 (+) 675 WP_313946235.1 hypothetical protein -
  RPQ07_RS23980 (RPQ07_23980) recD/recD2/recDB 5322020..5324224 (+) 2205 WP_313946236.1 ATP-dependent RecD-like DNA helicase Machinery gene
  RPQ07_RS23985 (RPQ07_23985) - 5324442..5325752 (+) 1311 WP_383245874.1 citrate synthase -
  RPQ07_RS23990 (RPQ07_23990) - 5326170..5328425 (-) 2256 WP_313946238.1 heavy metal translocating P-type ATPase -
  RPQ07_RS23995 (RPQ07_23995) - 5328534..5328842 (-) 309 WP_313946239.1 heavy-metal-associated domain-containing protein -

Sequence

Protein


Download         Length: 734 a.a.        Molecular weight: 79020.46 Da        Isoelectric Point: 6.7027

>NTDB_id=808775 RPQ07_RS23980 WP_313946236.1 5322020..5324224(+) (recD/recD2/recDB) [Streptomyces sp. AM8-1-1]
MSNPAVVEGVLERITYANEENGYTVARVDTGRGADLLTVVGSLLGAQPGESLRMEGRWGSHPQYGKQFTVENYTTVLPAT
VQGIRRYLGSGLIKGIGPRIAERIVDHFGIETLDIIEREPKKLIEVPGLGPKRTMLIGAAWEEQKAIKEVMIFLQGVGVS
TSIAVRIYKKYGDASISVVKNQPYRLAADVWGIGFLTADKIAQAVGIPHDSPERVKAGLQYALSQSTDQGHCFLPEEQLI
ADAVKLLQVDTGLVIECLAELAADEEGVVRESVPGADGGEAVTAVYLVPFHRAEISLAAQVNRLLRTDEDRMPGFRDVVW
DKALAWLADRTGAALAPEQEAAVRLALTSKVAVLTGGPGCGKSFTVRSVVELARAKKAKVVLAAPTGRAAKRLSELTGAE
ASTVHRLLELRPGGDAAYDRDRPLDADLVVVDEASMLDLLLANKLVKAVAPGAHLLLVGDVDQLPSVGAGEVLRDLLADG
GPVPHVRLTRIFRQAQQSGVVTNAHRINSGLPPITSGLSDFFLFVEDETEDAGRVTVDVAARRIPAKFGLDPRRDVQVLA
PMHRGPAGAGTLNGLLQQAITPARPDLPEKRFGGRVFRVGDKVTQIRNNYEKGKNGVFNGTVGVVTSLQPDDQRLTVLTD
EDEEVVYDFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRAKKLVVLVGSRKAIGQAVRTVSA
GRRFTALDHRLTGG

Nucleotide


Download         Length: 2205 bp        

>NTDB_id=808775 RPQ07_RS23980 WP_313946236.1 5322020..5324224(+) (recD/recD2/recDB) [Streptomyces sp. AM8-1-1]
ATGTCCAATCCAGCAGTGGTCGAAGGGGTCCTCGAGCGGATCACCTACGCCAACGAGGAGAACGGGTACACGGTCGCCCG
CGTCGACACCGGACGCGGCGCCGATCTCCTCACGGTCGTCGGCTCGCTGCTCGGCGCGCAGCCGGGCGAGTCCCTGCGCA
TGGAGGGCCGCTGGGGCTCCCATCCGCAGTACGGCAAGCAGTTCACCGTGGAGAACTACACCACCGTCCTCCCGGCCACC
GTCCAGGGCATACGCCGTTACCTCGGCTCCGGTCTGATCAAGGGCATCGGCCCGCGGATCGCCGAGCGCATCGTCGACCA
TTTCGGCATCGAGACCCTCGACATCATCGAGCGGGAGCCGAAGAAACTCATCGAGGTCCCCGGACTCGGCCCGAAGCGGA
CCATGTTGATCGGTGCCGCCTGGGAGGAACAGAAGGCCATCAAGGAGGTCATGATCTTCCTCCAGGGTGTCGGCGTCTCC
ACCTCCATCGCCGTGCGCATCTACAAGAAGTACGGGGACGCCTCGATCTCGGTCGTGAAGAACCAGCCCTACCGCCTAGC
GGCCGACGTGTGGGGCATCGGCTTCCTCACCGCCGACAAGATCGCCCAGGCCGTCGGCATACCCCACGACAGCCCGGAGC
GGGTCAAGGCCGGCCTCCAGTACGCCCTGTCCCAGTCGACCGACCAGGGCCACTGCTTCCTGCCCGAGGAGCAGTTGATC
GCGGACGCCGTGAAGCTCCTCCAGGTGGACACCGGCCTGGTCATCGAGTGCCTCGCCGAGCTCGCGGCCGACGAGGAGGG
GGTCGTGCGGGAAAGCGTGCCCGGGGCGGACGGGGGCGAGGCGGTGACCGCCGTCTATCTGGTGCCCTTCCACCGTGCCG
AGATCTCCCTGGCCGCCCAGGTGAACCGGCTGCTGCGCACCGACGAGGACCGGATGCCGGGCTTCCGGGACGTCGTGTGG
GACAAAGCGCTCGCCTGGCTCGCCGACCGCACCGGCGCCGCGCTGGCTCCCGAGCAGGAGGCCGCGGTGCGACTCGCGCT
CACCAGCAAGGTCGCCGTGCTCACCGGTGGCCCCGGCTGCGGAAAGTCCTTCACCGTGCGGTCGGTGGTGGAGCTGGCCC
GCGCCAAGAAGGCGAAGGTGGTGCTGGCCGCCCCCACCGGCCGCGCGGCCAAGCGGCTCTCGGAGCTGACCGGGGCGGAG
GCGTCCACCGTCCACCGGCTGCTGGAACTCAGACCGGGCGGCGACGCGGCATACGACCGTGACCGCCCGCTCGACGCCGA
TCTGGTCGTCGTGGACGAGGCGTCCATGCTCGATCTGCTGCTGGCCAACAAGCTGGTCAAGGCCGTCGCACCGGGGGCGC
ACCTGCTGCTCGTCGGGGACGTCGACCAGTTGCCGAGCGTGGGCGCGGGCGAGGTGCTGCGGGATCTGCTCGCGGACGGC
GGCCCGGTGCCCCATGTCCGCCTCACCCGGATCTTCCGGCAGGCCCAGCAGTCCGGTGTGGTGACCAACGCCCACCGCAT
CAACTCCGGTCTTCCGCCGATCACTTCGGGGCTCTCCGACTTCTTCCTCTTCGTCGAGGACGAGACGGAGGACGCGGGAA
GGGTCACCGTGGACGTGGCGGCCCGTCGGATTCCGGCCAAGTTCGGGCTCGACCCGCGGCGGGATGTGCAGGTTCTGGCG
CCCATGCACCGGGGCCCGGCGGGTGCGGGCACCCTCAACGGTCTGCTGCAACAGGCCATTACGCCCGCCCGGCCGGATCT
CCCCGAGAAGCGTTTCGGTGGACGGGTCTTCCGGGTCGGCGACAAGGTCACCCAGATTCGCAACAATTACGAGAAGGGAA
AGAACGGCGTCTTCAACGGCACGGTCGGCGTGGTCACCTCGCTCCAGCCGGATGATCAGCGGCTGACGGTGCTGACGGAC
GAGGACGAGGAGGTTGTGTACGACTTCGACGAGCTGGACGAGCTGGCCCACGCGTACGCCGTGACCATCCACCGCTCCCA
GGGCAGCGAATACCCGGCGGTGGTGATCCCGGTCACCACCGGAGCATGGATGATGCTTCAGCGGAACCTCCTCTACACGG
CGGTCACCCGGGCCAAGAAGCTCGTCGTGCTCGTCGGCTCCCGCAAGGCGATAGGACAGGCAGTGCGCACCGTTTCCGCA
GGCAGACGCTTCACCGCGCTCGACCACCGGCTGACCGGCGGCTGA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(657-705)

Helix-hairpin-helix domain (HHH_5)

(93-133)

Helix-hairpin-helix containing domain (HHH_RecD2)

(143-233)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(572-637)

AAA domain (AAA_30)

(335-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.471

100

0.369