Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   RPQ02_RS27595 Genome accession   NZ_CP135085
Coordinates   6154660..6155673 (+) Length   337 a.a.
NCBI ID   WP_313939338.1    Uniprot ID   -
Organism   Streptomyces sp. AM2-3-1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 6149660..6160673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPQ02_RS27575 (RPQ02_27575) - 6149940..6151616 (+) 1677 WP_313939334.1 ABC transporter substrate-binding protein -
  RPQ02_RS27580 (RPQ02_27580) - 6151638..6152684 (+) 1047 WP_313939335.1 ABC transporter ATP-binding protein -
  RPQ02_RS27585 (RPQ02_27585) - 6152681..6153661 (+) 981 WP_313939336.1 ABC transporter permease -
  RPQ02_RS27590 (RPQ02_27590) - 6153665..6154663 (+) 999 WP_313939337.1 ABC transporter permease -
  RPQ02_RS27595 (RPQ02_27595) amiE 6154660..6155673 (+) 1014 WP_313939338.1 ABC transporter ATP-binding protein Regulator
  RPQ02_RS27600 (RPQ02_27600) - 6155702..6157120 (+) 1419 WP_313939339.1 GH1 family beta-glucosidase -
  RPQ02_RS27605 (RPQ02_27605) - 6157273..6160386 (+) 3114 WP_313939340.1 glycoside hydrolase family 3 protein -

Sequence

Protein


Download         Length: 337 a.a.        Molecular weight: 36609.96 Da        Isoelectric Point: 6.3540

>NTDB_id=808689 RPQ02_RS27595 WP_313939338.1 6154660..6155673(+) (amiE) [Streptomyces sp. AM2-3-1]
MSEPVLTISGLNVDYGTGDAAVHALRDIDLTLHRGEVLGLAGESGSGKSTLAYAVTRLLSPPGVITGGEVHYHQRDGEAL
DLLTLTAPELRAFRWQELSIVFQGAMNSLNPVHTVHSQLTDVLKAHRPEMDRAERTARAKELLSLVGISADRLSAYPHQL
SGGMRQRVMIAMALALEPEIVIMDEPTTALDVVMQRQILRQLVKLREELGFSVVFITHDISLLIEFSDRIAIMYGGRIVE
EAGASDIYQDPHHPYSDGLLHSFPALHGPRRELTGIPGSPPHLSAMPAGCAFHPRCGKALEPCATHVPVLDRPEGDGSRT
VACWLHQPAPVTVAPRS

Nucleotide


Download         Length: 1014 bp        

>NTDB_id=808689 RPQ02_RS27595 WP_313939338.1 6154660..6155673(+) (amiE) [Streptomyces sp. AM2-3-1]
ATGAGCGAGCCCGTCCTCACCATCAGCGGCCTGAACGTGGACTACGGCACCGGGGACGCCGCCGTGCACGCGCTGCGCGA
CATCGACCTCACCCTGCACCGAGGCGAAGTCCTCGGCCTGGCAGGCGAGTCGGGCTCCGGCAAGTCCACCCTGGCGTACG
CCGTCACCCGCCTCCTCTCACCGCCCGGAGTGATCACCGGCGGCGAGGTCCACTACCACCAGCGCGACGGCGAAGCGCTC
GACCTGCTGACCCTGACCGCCCCCGAGCTCCGCGCCTTCCGCTGGCAGGAGTTGTCGATCGTCTTCCAGGGAGCGATGAA
CTCGCTCAACCCGGTGCACACGGTCCACAGCCAGCTCACCGACGTGCTCAAGGCGCACCGCCCGGAGATGGACCGGGCGG
AACGCACCGCACGCGCGAAGGAGCTGCTGTCGCTGGTCGGCATCTCCGCGGACCGGCTCTCCGCCTACCCGCACCAGCTC
TCCGGCGGCATGCGCCAGCGTGTGATGATCGCGATGGCGCTTGCGCTGGAGCCCGAGATCGTCATCATGGACGAGCCCAC
GACGGCCCTGGACGTCGTCATGCAGCGCCAGATCCTGCGCCAGCTGGTCAAGCTCCGCGAGGAGCTGGGCTTCTCGGTCG
TCTTCATCACGCACGACATCTCGCTGCTGATCGAGTTCTCGGACCGGATCGCGATCATGTACGGCGGCCGGATCGTCGAG
GAGGCCGGTGCCTCCGACATCTATCAGGACCCCCACCACCCCTACAGCGACGGCCTGCTGCACTCCTTCCCGGCTCTGCA
CGGTCCCCGTCGCGAACTCACCGGCATCCCCGGCTCGCCACCGCATCTGTCCGCGATGCCGGCCGGCTGCGCCTTCCACC
CGCGCTGCGGCAAGGCACTCGAGCCGTGCGCCACCCACGTGCCGGTGCTCGACCGGCCGGAAGGGGACGGCTCCCGCACA
GTGGCCTGCTGGCTGCATCAGCCGGCCCCGGTCACTGTCGCCCCCCGCTCGTAG

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-303)

ABC transporter (ABC_tran)

(25-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

38.393

99.703

0.383
  amiE Streptococcus thermophilus LMG 18311

38.209

99.407

0.38
  amiE Streptococcus thermophilus LMD-9

38.209

99.407

0.38