Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   RPQ02_RS08065 Genome accession   NZ_CP135085
Coordinates   1782244..1783617 (-) Length   457 a.a.
NCBI ID   WP_313936337.1    Uniprot ID   -
Organism   Streptomyces sp. AM2-3-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1777244..1788617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RPQ02_RS08040 (RPQ02_08040) - 1777490..1777858 (-) 369 WP_313936334.1 DUF6167 family protein -
  RPQ02_RS08045 (RPQ02_08045) - 1777866..1778315 (-) 450 WP_313941490.1 DUF948 domain-containing protein -
  RPQ02_RS08050 (RPQ02_08050) - 1778478..1780691 (+) 2214 WP_313936335.1 ATP-binding protein -
  RPQ02_RS08055 (RPQ02_08055) rpsD 1780709..1781323 (-) 615 WP_030918857.1 30S ribosomal protein S4 -
  RPQ02_RS08060 (RPQ02_08060) - 1781512..1782213 (+) 702 WP_313936336.1 DUF2470 domain-containing protein -
  RPQ02_RS08065 (RPQ02_08065) rarA 1782244..1783617 (-) 1374 WP_313936337.1 replication-associated recombination protein A Machinery gene
  RPQ02_RS08070 (RPQ02_08070) - 1783684..1784319 (-) 636 WP_313936338.1 vitamin K epoxide reductase family protein -
  RPQ02_RS08075 (RPQ02_08075) hisS 1784668..1785930 (-) 1263 WP_030968746.1 histidine--tRNA ligase -
  RPQ02_RS08080 (RPQ02_08080) - 1785945..1786631 (-) 687 WP_313936339.1 MBL fold metallo-hydrolase -
  RPQ02_RS08085 (RPQ02_08085) - 1786791..1787576 (+) 786 WP_313936340.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 48480.92 Da        Isoelectric Point: 6.2962

>NTDB_id=808644 RPQ02_RS08065 WP_313936337.1 1782244..1783617(-) (rarA) [Streptomyces sp. AM2-3-1]
MEPDLFTAAAEDRQEKDPSSSPLAVRMRPRVLDEVVGQQHLLKPGSPLRRLVGEGGGGPAGPSSVILWGPPGIGKTTLAY
VVSKATNKRFVELSAITAGVKEVRAVIESARRATGGYGKETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYF
SIISPLLSRSLLLTLESLTDDDLRALMRRALTAEHGLGGAVTLPEDAEAHLLRIAGGDARRALTALEAAAGAALAMQEKE
VTLQTVEATVDRAAVKYDRDGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPTAL
PTAVAAAQAVAMIGFPEAALTLSHATIALALAPKSNAATLAISAAQEDVRNGLAGPVPAHLRDGHYKGAAKLGHAQGYVY
PHDVPGGIAAQQYAPDAVADKRYYRPTRYGAEARYADVVDRVRDRLGRGGSDDATDA

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=808644 RPQ02_RS08065 WP_313936337.1 1782244..1783617(-) (rarA) [Streptomyces sp. AM2-3-1]
GTGGAGCCCGACCTCTTTACCGCAGCCGCCGAAGACCGCCAGGAGAAGGACCCGTCCAGCAGCCCCCTCGCTGTCCGGAT
GCGCCCTCGTGTCCTCGACGAGGTCGTCGGCCAGCAGCATCTGCTGAAGCCGGGCTCGCCGCTGCGCCGCCTCGTCGGCG
AAGGGGGCGGCGGGCCTGCCGGCCCCTCGTCGGTGATCCTCTGGGGCCCGCCCGGCATCGGCAAGACGACTCTGGCGTAC
GTGGTCAGCAAGGCCACCAACAAGCGCTTCGTCGAGCTCTCCGCGATCACCGCGGGGGTCAAGGAAGTACGGGCCGTCAT
CGAGAGCGCCCGCCGCGCCACCGGTGGCTACGGCAAGGAGACCGTCCTCTTCCTCGACGAGATCCACCGCTTCTCCAAGG
CCCAGCAGGACTCACTGCTGCCTGCCGTGGAGAACCGCTGGGTGACGCTCATCGCCGCGACGACCGAGAACCCGTACTTC
TCGATCATCTCGCCGCTGCTGTCGCGCTCGCTGCTCCTGACCCTCGAATCGCTCACCGACGACGACCTGCGCGCCCTGAT
GCGCCGCGCCCTGACCGCCGAGCACGGCCTCGGCGGGGCGGTCACACTGCCCGAGGACGCGGAGGCCCATCTGCTGCGCA
TCGCGGGCGGTGACGCGCGCCGCGCGCTGACGGCGCTGGAGGCCGCGGCCGGTGCGGCTCTCGCCATGCAGGAGAAGGAG
GTCACCCTCCAGACGGTCGAGGCGACCGTCGACCGGGCGGCCGTGAAGTACGACCGGGACGGCGACCAGCACTACGACGT
GGCGAGTGCCCTGATCAAGTCGATCCGCGGCTCCGACGTGGACGCGGCGCTGCACTATCTGGCCCGGATGATCGAGGCGG
GGGAGGACCCACGGTTCATCGCCCGGCGGCTGATGATCTCGGCCAGTGAGGACATCGGCCTCGCCGACCCGACGGCGCTT
CCCACAGCGGTCGCCGCCGCCCAGGCCGTCGCCATGATCGGCTTCCCGGAGGCGGCGCTCACCCTCAGCCACGCCACGAT
CGCGCTGGCGCTGGCCCCCAAGTCCAATGCGGCGACGCTGGCGATCTCCGCCGCCCAGGAGGATGTGCGCAACGGCCTGG
CGGGCCCGGTCCCGGCCCATCTGCGCGACGGCCACTACAAGGGGGCCGCCAAACTGGGCCATGCGCAGGGCTACGTCTAT
CCGCACGATGTCCCCGGCGGGATCGCAGCGCAGCAGTACGCCCCGGACGCGGTGGCCGACAAGCGCTACTACCGGCCCAC
CCGGTACGGCGCCGAGGCGCGCTACGCGGATGTGGTGGACCGGGTCCGCGATCGGCTGGGCCGCGGTGGTTCCGACGACG
CGACGGACGCGTGA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(65-169)

MgsA AAA+ ATPase C terminal (MgsA_C)

(277-441)

AAA C-terminal domain (AAA_assoc_2)

(200-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

43.981

94.53

0.416