Detailed information NTG0080864

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: OO986_RS09275
• Genome accession: NZ_AP026552
• Coordinates: 1995462..1996811 (-)
• Length: 449 a.a.
• NCBI ID: WP_047109176.1
• Uniprot ID: -
• Organism: Vibrio vulnificus strain VV20-8B-2 isolate homogenised shrimp
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1990462..2001811

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OO986_RS09260 (VV208B2_17080)	bioB	1991531..1992583 (-)	1053	WP_011080761.1	biotin synthase BioB	-
OO986_RS09265 (VV208B2_17090)	bioA	1992724..1994001 (+)	1278	WP_108694205.1	adenosylmethionine--8-amino-7-oxononanoate transaminase	-
OO986_RS09270 (VV208B2_17100)	serS	1994063..1995370 (-)	1308	WP_011080763.1	serine--tRNA ligase	-
OO986_RS09275 (VV208B2_17110)	rarA	1995462..1996811 (-)	1350	WP_047109176.1	replication-associated recombination protein A	Machinery gene
OO986_RS09280 (VV208B2_17120)	lolA	1996818..1997414 (-)	597	WP_108677000.1	outer membrane lipoprotein chaperone LolA	-
OO986_RS09285 (VV208B2_17130)	-	1997487..2000438 (-)	2952	WP_108694204.1	DNA translocase FtsK	-
OO986_RS09290 (VV208B2_17140)	lrp	2000583..2001077 (-)	495	WP_011080767.1	leucine-responsive transcriptional regulator Lrp	-

Sequence

Protein

• Length: 449 a.a.
• Molecular weight: 49734.08 Da
• Isoelectric Point: 5.6790

>NTDB_id=80864 OO986_RS09275 WP_047109176.1 1995462..1996811(-) (rarA) [Vibrio vulnificus strain VV20-8B-2 isolate homogenised shrimp]
MSNYTLDFSGDEDFRPLAARMRPETIEQYIGQQHILGPGKPLRRALEAGHIHSMILWGPPGTGKTTLAEVAANYANAEVE
RVSAVTSGVKEIRAAIEKARENKMAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTVTFIGATTENPSFELNNALLSRARV
YKLTSLNKEEISLALNQAINDKQRGLGNTPAHFADNVLDRLAELVNGDARMSLNYLELLYDMAEDNAQGEKEITLKLLAE
VAGEKVSRFDNKGDIWYDLISAVHKSIRGSNPDAALYWSARMIAAGCDPLYIARRLLAIASEDVGNADPRAMQVALSAWD
CFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAWKQALSDAHNLPEFEVPFHLRNAPTGLMKDLGYGEGYRYAHDEPGAY
AAGEQYLPAEIADRKYYQPTNRGLESKIAEKLDYLANLDANSPQKRYEK

Nucleotide

• Length: 1350 bp

>NTDB_id=80864 OO986_RS09275 WP_047109176.1 1995462..1996811(-) (rarA) [Vibrio vulnificus strain VV20-8B-2 isolate homogenised shrimp]
GTGTCAAATTACACCTTAGATTTTTCAGGGGACGAAGATTTTCGTCCCCTTGCTGCTCGTATGAGACCGGAAACGATCGA
ACAGTACATCGGTCAGCAGCATATTTTAGGCCCTGGTAAGCCATTACGTCGCGCGCTAGAGGCCGGCCACATTCATTCAA
TGATTTTGTGGGGACCTCCAGGTACAGGCAAGACGACATTAGCGGAAGTAGCCGCAAACTACGCCAACGCGGAAGTTGAA
CGCGTCTCTGCGGTCACGTCCGGCGTGAAAGAAATTCGGGCCGCAATTGAAAAAGCACGTGAGAACAAAATGGCAGGGCG
TCGCACCATCTTGTTTGTGGATGAGGTACATCGCTTTAATAAATCACAGCAAGATGCCTTCTTACCGCACATTGAAGATG
GAACAGTGACTTTTATCGGCGCGACCACAGAAAATCCATCGTTTGAACTGAACAACGCATTATTGTCACGTGCTCGTGTG
TATAAGCTTACGTCACTCAACAAAGAAGAAATCTCACTGGCATTAAACCAAGCGATCAACGATAAACAACGTGGTCTGGG
TAATACACCAGCACACTTTGCTGATAATGTCTTGGATCGTCTGGCTGAGCTCGTCAATGGTGATGCGCGAATGTCTCTTA
ACTATCTTGAGCTGCTGTATGACATGGCAGAAGACAATGCTCAGGGTGAAAAAGAGATCACGCTAAAGCTATTGGCGGAA
GTGGCGGGGGAGAAGGTCTCTCGTTTTGATAATAAAGGCGACATTTGGTACGACTTAATCTCTGCCGTGCACAAATCCAT
TCGCGGCTCAAACCCAGACGCTGCGCTTTATTGGTCGGCGAGAATGATCGCTGCCGGTTGTGATCCACTCTATATCGCGC
GACGTTTGCTGGCCATTGCCTCTGAAGATGTGGGCAACGCGGATCCGAGGGCAATGCAAGTGGCACTTTCCGCGTGGGAT
TGCTTTACCCGTGTTGGACCCGCAGAAGGCGAACGCGCAATTGCACAGGCGATCGTTTACCTTGCGTGCGCACCGAAAAG
TAATGCGGTTTACACCGCTTGGAAGCAAGCGCTGTCGGATGCGCATAATCTTCCAGAGTTTGAAGTGCCTTTCCATTTGC
GTAATGCACCGACCGGATTGATGAAAGATCTCGGTTATGGGGAAGGTTATCGATACGCTCATGATGAGCCTGGAGCCTAT
GCCGCTGGTGAACAATATTTGCCTGCCGAAATCGCTGATCGCAAGTACTATCAGCCAACAAATCGAGGCTTAGAGAGCAA
AATCGCTGAAAAGTTAGATTACTTGGCTAATTTAGACGCAAATAGCCCACAAAAGCGCTATGAAAAGTAG

Domains

Predicted by InterProScan.

• MgsA AAA+ ATPase C terminal (MgsA_C) (269-435)

• AAA C-terminal domain (AAA_assoc_2) (189-268)

• ATPase family associated with various cellular activities (AAA) (AAA) (54-159)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	40.189	94.209	0.379