Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   RMQ62_RS06235 Genome accession   NZ_CP135065
Coordinates   1264700..1265986 (-) Length   428 a.a.
NCBI ID   WP_174854010.1    Uniprot ID   -
Organism   Streptococcus suis strain ID24665     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1259700..1270986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ62_RS06200 (RMQ62_06200) nrdD 1260214..1262385 (+) 2172 WP_029179622.1 anaerobic ribonucleoside-triphosphate reductase -
  RMQ62_RS06205 (RMQ62_06205) - 1262478..1262612 (+) 135 WP_014638808.1 hypothetical protein -
  RMQ62_RS06210 (RMQ62_06210) - 1262763..1262969 (+) 207 WP_044763437.1 5'-nucleotidase C-terminal domain-containing protein -
  RMQ62_RS06215 (RMQ62_06215) - 1262971..1263465 (+) 495 WP_222812589.1 GNAT family N-acetyltransferase -
  RMQ62_RS06220 (RMQ62_06220) nrdG 1263652..1264209 (+) 558 WP_222812588.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  RMQ62_RS06235 (RMQ62_06235) rarA 1264700..1265986 (-) 1287 WP_174854010.1 replication-associated recombination protein A Machinery gene
  RMQ62_RS06240 (RMQ62_06240) - 1266060..1266530 (+) 471 WP_014636734.1 DUF3013 family protein -
  RMQ62_RS06245 (RMQ62_06245) - 1266532..1266885 (+) 354 WP_105183963.1 ASCH domain-containing protein -
  RMQ62_RS06250 (RMQ62_06250) prmA 1267482..1268435 (+) 954 WP_105183962.1 50S ribosomal protein L11 methyltransferase -
  RMQ62_RS06255 (RMQ62_06255) - 1268437..1269183 (+) 747 WP_105183961.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  RMQ62_RS06260 (RMQ62_06260) - 1269187..1269903 (+) 717 WP_105183960.1 DUF554 domain-containing protein -
  RMQ62_RS06265 (RMQ62_06265) - 1270147..1270704 (+) 558 WP_024407692.1 hypothetical protein -

Sequence

Protein


Download         Length: 428 a.a.        Molecular weight: 47449.14 Da        Isoelectric Point: 6.7871

>NTDB_id=808523 RMQ62_RS06235 WP_174854010.1 1264700..1265986(-) (rarA) [Streptococcus suis strain ID24665]
MPANLALRMRPKSIDDVIGQEHLVGPGKIIRRMIDANMLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATTDNQKRL
QEIAEEAKFSGGLVLLLDEIHRLNKTKQDFLLPLLENGNIIMIGATTENPFFSILPAIRSRVQIFELQPLQTSHIRQALE
LALTDRERGFDFPITIEPEALDFLANATNGDLRAAYNSLELAVLSTKKSDDGSRHIDLDAVENSLQKSYISMDKNGDAHY
DILSALQKSIRGSDVNASLHYAARLIEAEDLPSLARRLTVIAYEDIGLANPEAQIHTVMAIEAAQKIGFPEARILIANVV
VDLALSPKSNSAYQAMDAALADLRKNGHLPIPNHLRDGHYAGSKELGNAIGYQYPHAYPEKWVDQQYLPDKLLHADYFTA
NDTGKYERALGMTQEKIKNLKKNRRQNP

Nucleotide


Download         Length: 1287 bp        

>NTDB_id=808523 RMQ62_RS06235 WP_174854010.1 1264700..1265986(-) (rarA) [Streptococcus suis strain ID24665]
ATGCCAGCCAATCTCGCCCTTCGTATGCGGCCCAAATCCATTGATGACGTCATCGGTCAGGAACATCTGGTCGGTCCTGG
AAAGATTATCCGCCGCATGATTGATGCCAATATGCTGTCGTCCATGATTCTCTACGGTCCGCCGGGGATTGGCAAGACCT
CGATTGCGTCTGCCATTGCTGGCACGACCAAGTATGCCTTTCGGACCTTTAATGCCACGACGGACAACCAAAAACGCCTG
CAGGAAATCGCTGAAGAAGCCAAGTTTTCTGGTGGCCTGGTCCTCCTGCTCGATGAGATTCATCGCCTCAACAAGACCAA
ACAGGACTTTCTGCTTCCTCTCTTGGAAAATGGCAATATCATCATGATTGGGGCAACAACGGAAAATCCCTTCTTCTCAA
TTCTGCCTGCCATTCGCAGTCGAGTGCAGATTTTTGAATTACAACCTTTGCAAACCAGCCACATCCGACAGGCCTTGGAA
CTGGCTCTGACAGACAGAGAACGTGGTTTTGATTTCCCCATTACCATTGAGCCTGAGGCTCTGGACTTCCTAGCTAATGC
TACCAACGGTGACCTGCGTGCCGCTTACAATTCGCTAGAACTGGCTGTACTTTCGACCAAGAAAAGTGACGATGGCAGTC
GCCATATTGACCTAGACGCCGTGGAAAATAGCCTGCAAAAGTCCTACATCAGCATGGACAAGAACGGCGATGCCCACTAC
GACATCCTCTCGGCTCTGCAAAAATCCATTCGGGGCAGCGATGTCAATGCCAGCCTCCACTACGCCGCTCGTTTGATTGA
AGCGGAAGACCTGCCTAGTCTGGCCCGTCGCTTGACGGTCATCGCCTATGAAGACATCGGCTTGGCCAATCCAGAGGCTC
AGATTCATACGGTGATGGCCATTGAAGCCGCCCAGAAAATCGGCTTTCCAGAGGCTCGCATTTTAATTGCCAATGTGGTA
GTCGATTTGGCTCTTTCTCCCAAGTCCAATTCTGCCTATCAGGCTATGGATGCAGCTCTGGCTGATTTGCGGAAAAACGG
TCATCTGCCTATTCCAAATCACCTGCGTGACGGCCATTATGCTGGTAGTAAGGAGCTGGGAAATGCTATTGGCTACCAGT
ATCCGCATGCCTATCCTGAAAAATGGGTAGACCAGCAATACCTGCCCGATAAGTTACTTCATGCGGACTACTTTACCGCC
AACGACACCGGTAAATACGAGCGTGCCTTGGGTATGACCCAAGAAAAGATAAAAAATTTGAAAAAAAATAGACGCCAAAA
TCCTTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)

AAA C-terminal domain (AAA_assoc_2)

(173-251)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.33

97.664

0.579