Detailed information NTG0808496

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: RMQ62_RS04685
• Genome accession: NZ_CP135065
• Coordinates: 982160..984649 (+)
• Length: 829 a.a.
• NCBI ID: WP_313741864.1
• Uniprot ID: -
• Organism: Streptococcus suis strain ID24665
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 977160..989649

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RMQ62_RS04665 (RMQ62_04665)	-	977829..978962 (-)	1134	WP_313741862.1	LysM peptidoglycan-binding domain-containing protein	-
RMQ62_RS04670 (RMQ62_04670)	-	979357..980340 (-)	984	WP_313741863.1	Gfo/Idh/MocA family oxidoreductase	-
RMQ62_RS04675 (RMQ62_04675)	rnhC	980425..981315 (+)	891	WP_024400395.1	ribonuclease HIII	-
RMQ62_RS04680 (RMQ62_04680)	lepB	981325..981954 (+)	630	WP_053867265.1	signal peptidase I	-
RMQ62_RS04685 (RMQ62_04685)	recD/recD2/recDB	982160..984649 (+)	2490	WP_313741864.1	ATP-dependent RecD-like DNA helicase	Machinery gene
RMQ62_RS04690 (RMQ62_04690)	-	984817..985455 (-)	639	WP_172699633.1	endonuclease III domain-containing protein	-
RMQ62_RS04695 (RMQ62_04695)	-	985503..986423 (-)	921	WP_254457639.1	1-phosphofructokinase family hexose kinase	-
RMQ62_RS04700 (RMQ62_04700)	-	986528..987154 (-)	627	WP_109371063.1	NAD(P)-dependent oxidoreductase	-
RMQ62_RS04705 (RMQ62_04705)	-	987395..987814 (-)	420	WP_044767603.1	Rrf2 family transcriptional regulator	-
RMQ62_RS04710 (RMQ62_04710)	dinB	987857..988924 (-)	1068	WP_105134522.1	DNA polymerase IV	-

Sequence

Protein

• Length: 829 a.a.
• Molecular weight: 92921.00 Da
• Isoelectric Point: 4.5732

>NTDB_id=808496 RMQ62_RS04685 WP_313741864.1 982160..984649(+) (recD/recD2/recDB) [Streptococcus suis strain ID24665]
MNEVYFTGTIDRIIFENPSNFYKILLLEIEETDADYDDYEIIVAGTIADVIEGEDYRFYGNLVTHPKYGQQLQISRYERS
KPTSAGLVKYFSSDHFKGIGRKTAEKIVELYGEDTIDKILAEPEKLTQITGLSSKNRQAFVEKLRLNYGTELILAKLAEY
GIPNKLAFQIQDQYKEKTLQIIEENPYQLVEDVQGLGFTIADRIAENLGIASDSPQRFRAGMLFSLIHRSMETGDTYVEA
RDLLEATLELLEKSRHTELDPAAVAHELTGLIADDKVQQEGTKIFDNSLYFAEHGIHKNLTRLMGKNGFKPFPRADVEAA
IAELESMSSLTYDDIQKEAIVQAITNPLFILTGGPGTGKTTVINGIIAVYAILHKIDLTRNREECPVLLAAPTGRAARRM
NELTGLPSATIHRHLGLVEGQEESYRDDYLDADFIIVDEFSMVDTWLANQLFQNISSQTQVLIVGDAEQLPSVSPGQVLA
DLLKIDKLPSITLERIYRQSDDSTIVTLASQIRQGALPSDFREKKADRSYFEAQNEQIPALIERIVGAAIKSGIPANEVQ
ILAPMYRGAAGIDQLNTMSQALLNPLEDGELEFLHNEQAFRQGDRVIHLVNDAEANVFNGDLGYITDLLPAKYTDSKQDE
ITINFDGSEVTYPRNEWYKITLAYAMSIHKSQGSEFQVVILPITRTSHRMLQRNLVYTAITRSKSKLILLGEISAFDYAV
KNAGTLRKTYLVPRFQGEMAEQDSKESLTENNESKTATATKTQPPAQSGKPKQTEPVTENSQQLSLLDQDQPEKTSLQPR
EYILTVDNLLTIDPMIGIDQADIEEFFKA

Nucleotide

• Length: 2490 bp

>NTDB_id=808496 RMQ62_RS04685 WP_313741864.1 982160..984649(+) (recD/recD2/recDB) [Streptococcus suis strain ID24665]
ATGAACGAAGTGTATTTTACCGGTACTATTGACCGGATTATTTTTGAAAATCCTAGTAATTTTTATAAGATCCTTCTCCT
TGAAATCGAGGAGACAGACGCAGACTATGACGACTACGAAATTATTGTGGCCGGAACGATTGCCGATGTCATCGAAGGAG
AAGACTATCGTTTCTATGGCAATCTGGTCACCCATCCCAAGTATGGTCAGCAGCTGCAAATTTCGCGTTACGAACGCAGC
AAGCCCACTTCTGCCGGACTTGTCAAGTATTTCTCCAGCGACCATTTCAAGGGAATTGGACGTAAAACAGCGGAAAAAAT
CGTTGAGCTCTATGGCGAGGATACCATTGATAAGATTTTAGCTGAACCTGAAAAACTAACCCAAATCACAGGACTATCCA
GCAAGAACAGGCAGGCATTTGTCGAAAAACTCCGCCTCAATTATGGAACCGAGCTGATCTTGGCAAAACTAGCTGAGTAT
GGCATTCCCAATAAATTGGCCTTTCAAATCCAAGACCAGTATAAGGAAAAAACACTTCAGATTATTGAAGAAAATCCCTA
TCAACTGGTCGAAGATGTCCAGGGCCTCGGCTTCACCATTGCCGATAGGATTGCGGAAAACCTGGGAATTGCCAGCGATT
CCCCCCAACGCTTTCGGGCAGGTATGCTCTTTAGCCTCATCCATCGCTCCATGGAAACAGGCGATACCTATGTGGAGGCC
AGAGACTTGCTGGAAGCAACCCTTGAACTGCTGGAAAAATCCCGCCATACAGAACTGGACCCTGCCGCAGTTGCTCACGA
GTTGACAGGACTGATTGCAGACGACAAGGTACAGCAAGAAGGCACAAAGATTTTTGACAACAGCCTCTACTTTGCCGAAC
ATGGTATCCATAAAAACTTGACCCGCCTGATGGGAAAAAATGGTTTCAAGCCCTTCCCACGCGCAGACGTTGAGGCTGCC
ATAGCAGAGCTGGAAAGTATGTCTTCCCTAACCTACGATGACATTCAAAAAGAAGCCATTGTCCAAGCTATTACCAATCC
GCTTTTCATTCTGACAGGTGGACCAGGGACTGGAAAAACAACGGTTATCAACGGTATTATCGCGGTCTATGCCATCTTGC
ATAAGATTGACCTGACTCGCAACCGAGAAGAATGCCCTGTCCTCCTAGCCGCTCCAACTGGACGAGCAGCCAGACGGATG
AATGAATTGACAGGTTTGCCTTCCGCCACCATCCACCGCCATCTCGGTCTGGTAGAAGGACAGGAAGAATCCTACCGTGA
TGATTATTTGGATGCCGACTTTATCATCGTGGATGAGTTTTCTATGGTAGATACTTGGTTGGCAAACCAGCTCTTCCAGA
ACATCTCCTCCCAAACCCAAGTCCTGATTGTCGGCGATGCGGAGCAATTGCCTTCTGTCAGTCCCGGTCAGGTCCTAGCT
GACCTCTTGAAAATTGACAAGCTACCCAGCATCACTCTGGAACGCATCTACCGTCAATCCGATGATTCGACCATTGTTAC
CCTAGCCAGCCAAATCCGACAAGGAGCTCTACCTAGCGATTTCCGTGAGAAAAAGGCTGACCGCTCCTATTTTGAAGCGC
AAAACGAACAAATTCCAGCCCTGATTGAACGCATTGTCGGAGCAGCCATCAAGTCAGGTATCCCTGCAAACGAGGTCCAA
ATCCTCGCTCCCATGTACCGTGGTGCCGCAGGCATTGACCAACTTAACACCATGAGCCAGGCCCTGCTCAATCCCCTAGA
AGACGGAGAACTGGAGTTCCTCCACAACGAGCAAGCCTTCCGCCAAGGCGACCGGGTCATCCACCTAGTCAACGATGCCG
AGGCCAATGTCTTCAATGGTGATTTGGGCTACATCACCGACCTCCTGCCTGCCAAGTATACCGACTCCAAGCAGGACGAG
ATTACCATCAACTTCGATGGTAGCGAGGTCACCTATCCCCGTAACGAATGGTACAAGATTACCCTGGCCTATGCCATGTC
CATCCACAAGTCCCAAGGCAGTGAGTTCCAGGTCGTCATCCTCCCCATCACACGCACCAGCCACCGCATGCTCCAGCGCA
ACCTGGTCTACACCGCCATCACCCGCTCCAAGAGCAAGCTCATCCTCCTAGGCGAAATCTCCGCCTTCGACTACGCCGTC
AAAAACGCCGGAACCCTCCGCAAAACCTATCTGGTCCCACGTTTCCAAGGGGAAATGGCAGAGCAGGACAGCAAGGAAAG
CCTGACAGAAAACAACGAAAGCAAAACAGCTACAGCCACGAAAACCCAGCCACCTGCTCAATCGGGTAAGCCAAAACAAA
CAGAGCCAGTAACAGAAAACAGCCAGCAACTATCCCTTCTTGACCAAGACCAGCCAGAAAAAACAAGTCTCCAACCCAGA
GAATATATTCTGACCGTGGACAACCTGCTAACCATCGACCCCATGATTGGCATAGATCAGGCAGATATTGAAGAGTTTTT
TAAAGCATAA

Domains

Predicted by InterProScan.

• UvrD-like helicase C-terminal domain (UvrD_C_2) (663-710)

• Helix-hairpin-helix containing domain (HHH_RecD2) (148-237)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (575-645)

• AAA domain (AAA_30) (332-529)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	41.27	91.194	0.376