Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   RMQ62_RS00790 Genome accession   NZ_CP135065
Coordinates   159099..160868 (+) Length   589 a.a.
NCBI ID   WP_313680939.1    Uniprot ID   -
Organism   Streptococcus suis strain ID24665     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 154099..165868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ62_RS00755 (RMQ62_00755) - 154519..154833 (+) 315 WP_024384448.1 hypothetical protein -
  RMQ62_RS00760 (RMQ62_00760) - 154904..155665 (+) 762 WP_024384449.1 class I SAM-dependent methyltransferase -
  RMQ62_RS00765 (RMQ62_00765) pcp 155662..156309 (+) 648 WP_024411282.1 pyroglutamyl-peptidase I -
  RMQ62_RS00770 (RMQ62_00770) - 156309..156617 (+) 309 WP_029171816.1 DUF4298 domain-containing protein -
  RMQ62_RS00775 (RMQ62_00775) rpsP 156742..157014 (+) 273 WP_002940682.1 30S ribosomal protein S16 -
  RMQ62_RS00780 (RMQ62_00780) - 157036..157278 (+) 243 WP_012028079.1 KH domain-containing protein -
  RMQ62_RS00785 (RMQ62_00785) rcrP 157354..159090 (+) 1737 WP_109371466.1 ABC transporter ATP-binding protein Regulator
  RMQ62_RS00790 (RMQ62_00790) rcrQ 159099..160868 (+) 1770 WP_313680939.1 ABC transporter ATP-binding protein Regulator
  RMQ62_RS00795 (RMQ62_00795) - 160928..161851 (-) 924 WP_313680938.1 polysaccharide deacetylase family protein -
  RMQ62_RS00800 (RMQ62_00800) - 161956..163242 (+) 1287 WP_313680937.1 homoserine dehydrogenase -
  RMQ62_RS00805 (RMQ62_00805) thrB 163246..164106 (+) 861 WP_313680936.1 homoserine kinase -
  RMQ62_RS00810 (RMQ62_00810) murB 164237..165145 (+) 909 WP_105183835.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65791.84 Da        Isoelectric Point: 5.2752

>NTDB_id=808466 RMQ62_RS00790 WP_313680939.1 159099..160868(+) (rcrQ) [Streptococcus suis strain ID24665]
MKNRSVFTRVWDYLRRYKSSVFLAVFLKTISAVMNALEPFVLGLIITELTKNLLDMANGVEGAQINYSYIAIMLAIYALR
ALMYEIGAYGSNYFMTKAVQGATKELRQDLSHKINKIPVSYFDKHQYGDLLGRFTSDVETVSNALQQSFLQLVNAVLTLS
LAIFMCFWLDVSLALVVVTLVPVTYFGSKFVMGKSQPYFKQQADALGRLNGFVQENLTGFNVLKLYGREEISTEEFRQIT
ADLQEVGFKASFMSGLLMPLVHGLSNIAYVVVALLAGLKVLAGTLTVGNMQAFVQYVWQISQPVQTLTQLAPQLQSAKSS
LERIFSVLDELDEEDADALELTASLTGQVSFEQVEFGYSEDKPLIRNFNLDVKPGEMVAIVGPTGAGKTTLINLLMRFYD
VTSGAIKVDGQDIREISRQSYRSQFGMVLQDAWLYEGTIKENLRFGRLDATDEEIVEAAKAANVDHFIRTLPGGYNMEMN
QESSNISQGQKQLLTIARALLADPAILILDEATSSVDTRLELLIQKAMKRLMKGRTSFVIAHRLSTIQEADKILVLKDGQ
IIEQGNHESLLADKGFYYNLYQSQFSESK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=808466 RMQ62_RS00790 WP_313680939.1 159099..160868(+) (rcrQ) [Streptococcus suis strain ID24665]
ATGAAGAATAGATCAGTATTTACCCGTGTTTGGGACTATTTGCGTCGTTACAAATCTTCTGTATTTTTAGCTGTTTTTCT
AAAGACCATCAGTGCAGTTATGAATGCCTTGGAACCCTTTGTTCTGGGGCTTATCATCACAGAATTGACTAAGAATTTAT
TGGACATGGCAAATGGAGTAGAAGGAGCGCAGATTAACTATTCCTACATTGCCATCATGCTTGCTATCTATGCCCTGCGC
GCTCTGATGTATGAAATCGGTGCCTATGGTTCTAACTATTTTATGACCAAGGCAGTGCAGGGAGCAACCAAGGAACTACG
TCAGGACTTGAGCCACAAAATTAACAAGATTCCTGTTTCTTATTTTGACAAGCATCAATATGGTGATTTGCTGGGTCGAT
TTACAAGTGATGTGGAGACTGTGTCGAATGCTCTGCAACAAAGCTTTCTCCAGCTAGTCAATGCCGTTCTGACTCTCTCT
CTAGCCATTTTCATGTGTTTCTGGTTGGATGTATCCCTAGCACTTGTAGTCGTAACCTTGGTTCCAGTGACTTATTTTGG
TTCCAAGTTTGTCATGGGCAAATCCCAACCTTATTTCAAGCAACAGGCTGATGCCCTAGGTCGATTGAACGGCTTTGTCC
AAGAAAATCTGACAGGTTTTAACGTTCTCAAACTCTACGGCCGTGAAGAAATTTCTACAGAAGAATTTCGCCAGATTACC
GCAGATTTGCAGGAAGTTGGTTTCAAGGCTAGTTTTATGTCTGGTTTGCTCATGCCCCTGGTACACGGCTTATCGAACAT
TGCCTATGTAGTCGTGGCCTTACTTGCTGGTCTGAAAGTTCTTGCAGGTACATTGACAGTTGGTAATATGCAGGCCTTCG
TCCAATACGTCTGGCAGATTTCTCAGCCAGTCCAAACCTTGACCCAGTTGGCACCCCAGTTGCAGTCTGCTAAATCTTCC
CTTGAACGCATCTTTTCAGTCTTAGATGAGCTTGACGAAGAAGACGCCGATGCGCTAGAGTTGACAGCTAGTTTGACCGG
ACAAGTCAGCTTTGAACAGGTCGAATTTGGCTATTCAGAAGATAAGCCGCTTATCCGTAACTTTAATCTTGATGTTAAGC
CAGGTGAAATGGTGGCTATCGTTGGACCAACAGGGGCTGGTAAGACAACCCTCATCAACCTTCTCATGCGTTTCTATGAT
GTCACATCCGGTGCTATCAAGGTGGATGGTCAGGATATTAGAGAGATTTCTCGTCAATCCTACCGTAGTCAATTTGGTAT
GGTCTTGCAGGATGCCTGGCTCTACGAAGGGACCATCAAGGAAAACCTGCGTTTTGGACGTCTGGATGCGACGGATGAGG
AAATTGTGGAAGCTGCCAAAGCCGCCAACGTTGACCACTTTATCCGTACCCTGCCTGGCGGTTATAATATGGAAATGAAC
CAGGAATCCAGCAATATTTCCCAAGGTCAGAAACAGCTTTTGACCATTGCACGTGCCTTGTTGGCGGATCCTGCCATTCT
GATTCTTGACGAAGCGACTTCTTCAGTTGATACCCGTTTGGAACTCTTGATTCAAAAGGCCATGAAACGGTTGATGAAAG
GGCGGACAAGTTTCGTCATCGCCCACCGTTTATCAACCATTCAGGAAGCTGATAAGATTTTGGTCTTGAAAGATGGACAG
ATTATCGAACAAGGTAACCATGAAAGTCTTTTGGCAGATAAAGGTTTCTATTATAATCTGTATCAAAGTCAGTTTAGTGA
ATCCAAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(366-514)

ABC transporter transmembrane region (ABC_membrane)

(21-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.22

100

0.433