Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   RMQ63_RS05240 Genome accession   NZ_CP135063
Coordinates   1110506..1111792 (+) Length   428 a.a.
NCBI ID   WP_174854010.1    Uniprot ID   -
Organism   Streptococcus suis strain ID32563     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1105506..1116792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ63_RS05210 (RMQ63_05210) - 1105788..1106345 (-) 558 WP_024407692.1 hypothetical protein -
  RMQ63_RS05215 (RMQ63_05215) - 1106589..1107305 (-) 717 WP_105183960.1 DUF554 domain-containing protein -
  RMQ63_RS05220 (RMQ63_05220) - 1107309..1108055 (-) 747 WP_105183961.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  RMQ63_RS05225 (RMQ63_05225) prmA 1108057..1109010 (-) 954 WP_105183962.1 50S ribosomal protein L11 methyltransferase -
  RMQ63_RS05230 (RMQ63_05230) - 1109607..1109960 (-) 354 WP_105183963.1 ASCH domain-containing protein -
  RMQ63_RS05235 (RMQ63_05235) - 1109962..1110432 (-) 471 WP_014636734.1 DUF3013 family protein -
  RMQ63_RS05240 (RMQ63_05240) rarA 1110506..1111792 (+) 1287 WP_174854010.1 replication-associated recombination protein A Machinery gene
  RMQ63_RS05255 (RMQ63_05255) nrdG 1112283..1112840 (-) 558 WP_222812588.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  RMQ63_RS05260 (RMQ63_05260) - 1113027..1113521 (-) 495 WP_222812589.1 GNAT family N-acetyltransferase -
  RMQ63_RS05265 (RMQ63_05265) - 1113523..1113729 (-) 207 WP_044763437.1 5'-nucleotidase C-terminal domain-containing protein -
  RMQ63_RS05270 (RMQ63_05270) - 1113880..1114014 (-) 135 WP_014638808.1 hypothetical protein -
  RMQ63_RS05275 (RMQ63_05275) nrdD 1114107..1116278 (-) 2172 WP_313680532.1 anaerobic ribonucleoside-triphosphate reductase -

Sequence

Protein


Download         Length: 428 a.a.        Molecular weight: 47449.14 Da        Isoelectric Point: 6.7871

>NTDB_id=808409 RMQ63_RS05240 WP_174854010.1 1110506..1111792(+) (rarA) [Streptococcus suis strain ID32563]
MPANLALRMRPKSIDDVIGQEHLVGPGKIIRRMIDANMLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATTDNQKRL
QEIAEEAKFSGGLVLLLDEIHRLNKTKQDFLLPLLENGNIIMIGATTENPFFSILPAIRSRVQIFELQPLQTSHIRQALE
LALTDRERGFDFPITIEPEALDFLANATNGDLRAAYNSLELAVLSTKKSDDGSRHIDLDAVENSLQKSYISMDKNGDAHY
DILSALQKSIRGSDVNASLHYAARLIEAEDLPSLARRLTVIAYEDIGLANPEAQIHTVMAIEAAQKIGFPEARILIANVV
VDLALSPKSNSAYQAMDAALADLRKNGHLPIPNHLRDGHYAGSKELGNAIGYQYPHAYPEKWVDQQYLPDKLLHADYFTA
NDTGKYERALGMTQEKIKNLKKNRRQNP

Nucleotide


Download         Length: 1287 bp        

>NTDB_id=808409 RMQ63_RS05240 WP_174854010.1 1110506..1111792(+) (rarA) [Streptococcus suis strain ID32563]
ATGCCAGCCAATCTCGCCCTTCGTATGCGGCCCAAATCCATTGATGACGTCATCGGTCAGGAACATCTGGTCGGTCCTGG
AAAGATTATCCGCCGCATGATTGATGCCAATATGCTGTCGTCCATGATTCTCTACGGTCCGCCGGGGATTGGCAAGACCT
CGATTGCGTCTGCCATTGCTGGCACGACCAAGTATGCCTTTCGGACCTTTAATGCCACGACGGACAACCAAAAACGCCTG
CAGGAAATCGCTGAAGAAGCCAAGTTTTCTGGTGGCCTGGTCCTCCTGCTCGATGAGATTCATCGCCTCAACAAGACCAA
ACAGGACTTTCTGCTTCCTCTCTTGGAAAATGGCAATATCATCATGATTGGGGCAACAACGGAAAATCCCTTCTTCTCAA
TTCTGCCTGCCATTCGCAGTCGAGTGCAGATTTTTGAATTACAACCTTTGCAAACCAGCCACATCCGACAGGCCTTGGAA
CTGGCTCTGACAGACAGAGAACGTGGTTTTGATTTCCCCATTACCATTGAGCCTGAGGCTCTGGACTTCCTAGCTAATGC
TACCAACGGTGACCTGCGTGCCGCTTACAATTCGCTAGAACTGGCTGTACTTTCGACCAAGAAAAGTGACGATGGCAGTC
GCCATATTGACCTAGACGCCGTGGAAAATAGCCTGCAAAAGTCCTACATCAGCATGGACAAGAACGGCGATGCCCACTAC
GACATCCTCTCGGCTCTGCAAAAATCCATTCGGGGCAGCGATGTCAATGCCAGCCTCCACTACGCCGCTCGTTTGATTGA
AGCGGAAGACCTGCCTAGTCTGGCCCGTCGCTTGACGGTCATCGCCTATGAAGACATCGGCTTGGCCAATCCAGAGGCTC
AGATTCATACGGTGATGGCCATTGAAGCCGCCCAGAAAATCGGCTTTCCAGAGGCTCGCATTTTAATTGCCAATGTGGTA
GTCGATTTGGCTCTTTCTCCCAAGTCCAATTCTGCCTATCAGGCTATGGATGCAGCTCTGGCTGATTTGCGGAAAAACGG
TCATCTGCCTATTCCAAATCACCTGCGTGACGGCCATTATGCTGGTAGTAAGGAGCTGGGAAATGCTATTGGCTACCAGT
ATCCGCATGCCTATCCTGAAAAATGGGTAGACCAGCAATACCTGCCCGATAAGTTACTTCATGCGGACTACTTTACCGCC
AACGACACCGGTAAATACGAGCGTGCCTTGGGTATGACCCAAGAAAAGATAAAAAATTTGAAAAAAAATAGACGCCAAAA
TCCTTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)

AAA C-terminal domain (AAA_assoc_2)

(173-251)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.33

97.664

0.579