Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   P3T49_RS08930 Genome accession   NZ_CP120723
Coordinates   1733594..1734373 (+) Length   259 a.a.
NCBI ID   WP_003328951.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain NX-12     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1728594..1739373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T49_RS08910 trmFO 1729289..1730596 (+) 1308 WP_063637671.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  P3T49_RS08915 xerC 1730663..1731577 (+) 915 WP_277714705.1 tyrosine recombinase XerC -
  P3T49_RS08920 clpQ 1731591..1732136 (+) 546 WP_003328953.1 ATP-dependent protease subunit ClpQ -
  P3T49_RS08925 hslU 1732144..1733556 (+) 1413 WP_255265367.1 HslU--HslV peptidase ATPase subunit -
  P3T49_RS08930 codY 1733594..1734373 (+) 780 WP_003328951.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  P3T49_RS08935 flgB 1734794..1735183 (+) 390 WP_277714706.1 flagellar basal body rod protein FlgB -
  P3T49_RS08940 flgC 1735183..1735632 (+) 450 WP_061670771.1 flagellar basal body rod protein FlgC -
  P3T49_RS08945 fliE 1735643..1735963 (+) 321 WP_010788606.1 flagellar hook-basal body complex protein FliE -
  P3T49_RS08950 fliF 1736007..1737614 (+) 1608 WP_035175119.1 flagellar basal-body MS-ring/collar protein FliF -
  P3T49_RS08955 fliG 1737627..1738643 (+) 1017 WP_003328945.1 flagellar motor switch protein FliG -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29042.26 Da        Isoelectric Point: 4.6017

>NTDB_id=808359 P3T49_RS08930 WP_003328951.1 1733594..1734373(+) (codY) [Bacillus atrophaeus strain NX-12]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=808359 P3T49_RS08930 WP_003328951.1 1733594..1734373(+) (codY) [Bacillus atrophaeus strain NX-12]
ATGGCTTTATTACAAAAAACAAGAATTATTAATTCCATGCTTCAAGCTGCGGCAGGGAAACCGGTAAACTTTAAAGAAAT
GGCGGAAACACTTCGGGATGTTATTGATTCAAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTGTTAGGCTATTCTATTA
ATCAGCAAATCGAGAACGACCGTATGAAAAAAATGCTTGAAGACCGTCAGTTCCCGGAAGAATACACAAAAAACCTATTT
AATATTCCGGAGACTTCTTCTAATCTGGATATTAACAGTGAGTACACAGCGTTTCCGGTCGAAAACAGAGATCTGTTCCA
AGCTGGTTTAACAACAATTGTACCTATTATCGGAGGCGGAGAAAGACTTGGAACGCTTATTCTTTCACGCTTGCAGGATC
AATTTGAGGACGATGATCTAATTCTTGCTGAATACGGGGCGACCGTTGTAGGAATGGAAATCCTCAGAGAAAAAGCAGAA
GAAATTGAAGAAGAAGCACGCAGCAAAGCTGTAGTTCAAATGGCGATCAGTTCTCTTTCTTACAGTGAGCTTGAAGCGAT
TGAGCACATCTTTGAAGAACTTGACGGAAACGAAGGCCTGCTTGTGGCGAGTAAAATTGCAGACCGCGTCGGCATTACCC
GTTCCGTGATTGTCAATGCACTCAGAAAGCTTGAAAGTGCCGGTGTCATCGAATCGAGATCACTCGGAATGAAGGGCACT
TATATTAAAGTCCTTAATAACAAGTTCTTGATCGAATTAGAAAACCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471