Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   P3T49_RS08900 Genome accession   NZ_CP120723
Coordinates   1726050..1726949 (+) Length   299 a.a.
NCBI ID   WP_277714704.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain NX-12     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1721050..1731949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T49_RS08880 - 1721700..1723448 (+) 1749 WP_277714703.1 hypothetical protein -
  P3T49_RS08885 - 1723445..1723726 (+) 282 WP_003328960.1 FlhB-like flagellar biosynthesis protein -
  P3T49_RS08890 sucC 1723900..1725057 (+) 1158 WP_010788598.1 ADP-forming succinate--CoA ligase subunit beta -
  P3T49_RS08895 sucD 1725086..1725988 (+) 903 WP_003328958.1 succinate--CoA ligase subunit alpha -
  P3T49_RS08900 dprA 1726050..1726949 (+) 900 WP_277714704.1 DNA-processing protein DprA Machinery gene
  P3T49_RS08905 topA 1727138..1729213 (+) 2076 WP_010788600.1 type I DNA topoisomerase -
  P3T49_RS08910 trmFO 1729289..1730596 (+) 1308 WP_063637671.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  P3T49_RS08915 xerC 1730663..1731577 (+) 915 WP_277714705.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 33217.29 Da        Isoelectric Point: 9.5634

>NTDB_id=808358 P3T49_RS08900 WP_277714704.1 1726050..1726949(+) (dprA) [Bacillus atrophaeus strain NX-12]
MDQASACLLICSINRLLSPSLLLKWWKADPSLSFKTDPHPIHTITSGKIKAAALKTQIEKEYDKLQEQLSDYQRRGIKVI
PITSHQYPTWLKTIYDPPPVLFAKGNENLLIKGRKIGVVGTRNPTAYGKKVVFHLTKELAGNQWIIVSGLAAGIDGLSHR
ACIRAKGYTIGVIAGGFHHIYPRENQQLAEYMAKYHLLLSEHPPDTKPQKWHFPMRNRLISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFDPYSGGPIKLIQEGAKSVQSAEDIYSELSEGNVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=808358 P3T49_RS08900 WP_277714704.1 1726050..1726949(+) (dprA) [Bacillus atrophaeus strain NX-12]
TTGGATCAGGCGTCTGCCTGTTTACTCATTTGCAGCATTAACCGTTTATTATCCCCGTCTCTTCTATTAAAATGGTGGAA
GGCTGATCCGTCTCTTTCTTTTAAGACTGATCCGCACCCAATACACACCATCACTTCCGGTAAAATAAAAGCCGCCGCAC
TTAAAACTCAAATAGAGAAAGAATATGATAAGCTTCAAGAACAGCTGTCTGACTATCAACGGCGAGGTATCAAAGTCATT
CCGATCACTTCACATCAATATCCGACATGGCTGAAAACGATCTATGATCCGCCTCCTGTTTTGTTTGCCAAAGGGAATGA
GAACCTGCTTATAAAAGGCCGGAAAATTGGAGTGGTAGGTACGCGAAATCCTACCGCATATGGCAAAAAAGTAGTTTTTC
ATCTAACAAAAGAGCTTGCAGGCAACCAGTGGATCATTGTCAGCGGACTCGCGGCCGGAATAGACGGTTTGTCCCATAGA
GCCTGCATCAGGGCAAAAGGGTATACAATCGGTGTCATAGCAGGCGGTTTTCATCATATATATCCCCGAGAAAATCAGCA
GTTAGCAGAATACATGGCGAAGTATCATCTGCTGCTGTCAGAACATCCACCGGACACAAAACCCCAAAAATGGCATTTTC
CCATGAGAAACCGTTTAATAAGCGGATTGTCCGAAGGCATAGTAGTAGTGCAAGGCAAAGAAAAAAGCGGTTCGTTAATC
ACTGCCTATCAAGCGCTTGACCAGGGCAGGGAGGTGTTTGCCGTGCCCGGTTCTATATTTGATCCATACTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCAAAATCTGTACAGTCCGCTGAGGATATTTACAGTGAGTTATCGGAGGGAAACGTTC
AATATACGGAACCCTTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

74.247

100

0.742