Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   P6988_RS02325 Genome accession   NZ_CP120719
Coordinates   493869..494573 (-) Length   234 a.a.
NCBI ID   WP_277684539.1    Uniprot ID   -
Organism   Vibrio coralliilyticus strain Rb102     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 488869..499573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P6988_RS02305 (P6988_02305) recG 489484..491562 (+) 2079 WP_277684537.1 ATP-dependent DNA helicase RecG -
  P6988_RS02310 (P6988_02310) cysQ 491654..492481 (-) 828 WP_006957188.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  P6988_RS02315 (P6988_02315) nudE 492508..493056 (-) 549 WP_277684538.1 ADP compounds hydrolase NudE -
  P6988_RS02320 (P6988_02320) nfuA 493188..493775 (-) 588 WP_006957194.1 Fe-S biogenesis protein NfuA -
  P6988_RS02325 (P6988_02325) comF 493869..494573 (-) 705 WP_277684539.1 ComF family protein Machinery gene
  P6988_RS02330 (P6988_02330) bioH 494632..495429 (+) 798 WP_277684540.1 pimeloyl-ACP methyl ester esterase BioH -
  P6988_RS02335 (P6988_02335) - 495539..496009 (+) 471 WP_006957199.1 hypothetical protein -
  P6988_RS02340 (P6988_02340) - 496083..498410 (-) 2328 WP_277684541.1 Tex family protein -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 27094.69 Da        Isoelectric Point: 8.5366

>NTDB_id=808291 P6988_RS02325 WP_277684539.1 493869..494573(-) (comF) [Vibrio coralliilyticus strain Rb102]
MLTDWIKKHTAYLLPSHCDLCQMAIGAQAAHPLFCCFCLRRFVPVPRCRRCGLVTPEYVEMCGECIVAPPLWTHLYCVGD
YQPPLSSYVHRLKYEGQYWQAKTLSLLLVSRIDTRPDLITFVPLHWRRYCYRGYNQSQHLAWQIGRELDVPCEALFKKKR
ATERQQGMDKKQRKENVLQAFHLRKSINIEHVAIVDDVLTTGSTVHQLCELLLGAGVKTIDIYCICRTPEPSSR

Nucleotide


Download         Length: 705 bp        

>NTDB_id=808291 P6988_RS02325 WP_277684539.1 493869..494573(-) (comF) [Vibrio coralliilyticus strain Rb102]
ATGTTAACCGATTGGATTAAGAAACACACAGCCTACCTGTTACCCAGTCATTGCGATTTGTGCCAGATGGCGATCGGAGC
GCAAGCGGCGCACCCCTTATTCTGCTGTTTCTGTCTGCGACGTTTTGTGCCAGTTCCTCGCTGCAGACGATGTGGCTTGG
TGACCCCTGAGTACGTCGAAATGTGTGGGGAATGTATAGTTGCCCCGCCATTGTGGACGCACTTGTATTGTGTCGGAGAC
TATCAACCGCCGCTATCGAGTTACGTTCACCGACTTAAGTACGAAGGTCAGTACTGGCAGGCTAAAACCTTGTCTTTGCT
GTTGGTGTCACGCATCGACACTCGACCAGACCTGATTACTTTTGTCCCCTTGCACTGGCGTCGTTACTGTTATCGTGGCT
ACAACCAAAGTCAGCATCTGGCATGGCAAATTGGTCGAGAGCTGGATGTGCCTTGTGAGGCTCTATTTAAGAAAAAGCGT
GCAACGGAAAGGCAACAAGGAATGGATAAAAAGCAGCGTAAGGAGAATGTGCTTCAGGCTTTTCATCTAAGAAAGTCGAT
AAATATCGAGCATGTCGCTATTGTCGATGATGTGCTAACTACAGGCAGTACCGTGCATCAATTATGTGAATTATTGCTCG
GTGCTGGAGTGAAAACCATTGATATTTATTGCATTTGTCGCACTCCTGAACCTTCTAGCCGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(141-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

50

99.145

0.496
  comF Vibrio campbellii strain DS40M4

45.614

97.436

0.444