Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PZ898_RS10570 Genome accession   NZ_CP120710
Coordinates   2340632..2341285 (+) Length   217 a.a.
NCBI ID   WP_277695461.1    Uniprot ID   -
Organism   Chryseobacterium sp. WX     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2335632..2346285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PZ898_RS10555 (PZ898_10555) aceA 2335689..2336972 (-) 1284 WP_347176658.1 isocitrate lyase -
  PZ898_RS10560 (PZ898_10560) aceB 2337084..2338658 (-) 1575 WP_277695459.1 malate synthase A -
  PZ898_RS10565 (PZ898_10565) - 2338786..2340264 (+) 1479 WP_277695460.1 helix-turn-helix transcriptional regulator -
  PZ898_RS10570 (PZ898_10570) comF 2340632..2341285 (+) 654 WP_277695461.1 ComF family protein Machinery gene
  PZ898_RS10575 (PZ898_10575) - 2341435..2342121 (+) 687 WP_277695462.1 alpha/beta hydrolase -
  PZ898_RS10580 (PZ898_10580) upp 2342123..2342773 (-) 651 WP_062676151.1 uracil phosphoribosyltransferase -
  PZ898_RS10585 (PZ898_10585) der 2342928..2344238 (-) 1311 WP_110008006.1 ribosome biogenesis GTPase Der -
  PZ898_RS10595 (PZ898_10595) - 2344781..2344969 (-) 189 WP_347176656.1 transposase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25303.09 Da        Isoelectric Point: 6.5661

>NTDB_id=808131 PZ898_RS10570 WP_277695461.1 2340632..2341285(+) (comF) [Chryseobacterium sp. WX]
MILDVLFPNRCIHCNTIIDPELLVCGLCFSQIHFTHYNYFENNPVKEKCSLFFPVENAFSLIQFEEESLSRQIIHELKYR
SRERIGKILAEWMIDRLDFRDDHPDLLVTVPLHPKKLREQGYNQLHLFTETLSEFYDIPFDHELVKRNHYSKAQALKDKK
HRLKTTNTFSVTQPVSGKHILLIDDVFTTGNTVSSVAWEILNAGDNKVSVLVMAVDI

Nucleotide


Download         Length: 654 bp        

>NTDB_id=808131 PZ898_RS10570 WP_277695461.1 2340632..2341285(+) (comF) [Chryseobacterium sp. WX]
ATGATATTAGATGTATTGTTTCCCAACCGCTGCATCCACTGCAACACAATCATTGATCCAGAACTATTGGTTTGTGGCCT
TTGTTTCAGCCAGATTCATTTTACCCATTACAATTATTTTGAAAATAATCCAGTCAAGGAAAAATGCAGTTTATTTTTTC
CGGTTGAAAATGCGTTTTCTTTAATTCAGTTTGAAGAGGAAAGTTTAAGCCGGCAGATTATCCATGAACTGAAATACAGA
AGCAGGGAAAGAATAGGAAAGATTCTAGCAGAGTGGATGATAGATCGTTTGGATTTTAGAGATGACCATCCTGATCTTTT
AGTAACTGTACCACTCCATCCAAAGAAATTAAGAGAACAGGGATATAATCAGCTTCATTTATTCACAGAAACATTATCAG
AATTTTATGATATTCCGTTTGATCATGAATTAGTCAAAAGAAATCATTATTCCAAAGCTCAGGCTTTAAAAGACAAAAAA
CACAGGCTGAAGACCACTAATACATTTTCAGTTACCCAACCTGTTTCTGGAAAGCATATCCTCCTGATTGATGATGTTTT
TACCACAGGAAATACTGTTTCATCAGTTGCGTGGGAGATTTTAAATGCTGGTGACAATAAAGTAAGTGTATTGGTGATGG
CTGTGGATATTTGA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

53.241

99.539

0.53