Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   HXS61_RS06250 Genome accession   NZ_AP023046
Coordinates   1204560..1205333 (+) Length   257 a.a.
NCBI ID   WP_034376902.1    Uniprot ID   -
Organism   Helicobacter suis strain NHP19-4022     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1199560..1210333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXS61_RS06215 (NHP194022_12370) - 1199834..1200943 (-) 1110 WP_050780196.1 DUF354 domain-containing protein -
  HXS61_RS06220 (NHP194022_12380) - 1200940..1201650 (-) 711 WP_006564435.1 5'-methylthioadenosine/adenosylhomocysteine nucleosidase -
  HXS61_RS06230 (NHP194022_12390) - 1201937..1202167 (+) 231 WP_176486481.1 hypothetical protein -
  HXS61_RS06235 (NHP194022_12400) - 1202204..1202632 (-) 429 WP_034376904.1 hypothetical protein -
  HXS61_RS06240 (NHP194022_12410) - 1202616..1203302 (-) 687 WP_006564434.1 Bax inhibitor-1/YccA family protein -
  HXS61_RS06245 (NHP194022_12420) - 1203412..1204419 (+) 1008 WP_006564433.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  HXS61_RS06250 (NHP194022_12430) comB8 1204560..1205333 (+) 774 WP_034376902.1 VirB8/TrbF family protein Machinery gene
  HXS61_RS06255 (NHP194022_12440) gatB 1205338..1206768 (-) 1431 WP_034376900.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  HXS61_RS06260 (NHP194022_12450) hemH 1206989..1208008 (+) 1020 WP_006564431.1 ferrochelatase -
  HXS61_RS06265 (NHP194022_12460) - 1207999..1208634 (+) 636 WP_006564430.1 thioredoxin family protein -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29523.10 Da        Isoelectric Point: 9.0939

>NTDB_id=80811 HXS61_RS06250 WP_034376902.1 1204560..1205333(+) (comB8) [Helicobacter suis strain NHP19-4022]
MDSKEQDLLKEQLFHELYLKIQENQAKLEQEMASKIESLALSHLDLNSVFRIERRNSAMAYKLVVLLSLISLALTVALII
LLPLKQTQHHFIDFANQDKHYAIIQRADANLASNEALVRSLVGQYILNRESINHIDDQNRYEVVRLQSNSSVWHVFESLV
ASKNSIYTAPKMDRDIHIVNIALLKHSKNQNIAHVQIVAKLFDAGQLIQQKRYNIVLSFTFLPPPSFDTTMMPKNPTGFQ
VSRYSVTEMQDLKTLKP

Nucleotide


Download         Length: 774 bp        

>NTDB_id=80811 HXS61_RS06250 WP_034376902.1 1204560..1205333(+) (comB8) [Helicobacter suis strain NHP19-4022]
ATGGATTCTAAGGAGCAAGACCTCCTCAAAGAACAACTTTTTCACGAATTGTATTTAAAAATCCAAGAGAATCAAGCCAA
ATTAGAACAGGAAATGGCTAGTAAGATTGAAAGTTTGGCTTTATCACACCTAGATTTAAATAGTGTGTTTCGGATTGAAA
GACGCAATAGTGCTATGGCTTATAAACTTGTGGTGCTATTAAGTCTGATTAGTTTAGCTTTAACCGTTGCGTTAATTATT
CTCTTGCCTCTTAAACAAACCCAGCACCATTTTATTGACTTTGCTAACCAAGATAAACACTATGCCATTATCCAAAGAGC
TGATGCAAATTTAGCCAGTAACGAAGCTTTAGTGCGTTCATTAGTAGGCCAATACATTTTAAACCGCGAATCTATTAACC
ACATTGACGATCAAAACCGCTATGAAGTGGTGCGTTTACAAAGTAACTCGTCAGTTTGGCATGTTTTTGAAAGTCTAGTC
GCCTCTAAAAATAGCATTTACACCGCCCCTAAAATGGATCGCGATATTCATATCGTCAATATTGCCTTGCTTAAACATTC
TAAGAATCAAAATATCGCCCATGTACAAATTGTGGCTAAACTCTTTGATGCGGGGCAATTAATCCAGCAAAAGCGCTATA
ACATCGTGCTTAGCTTTACTTTTTTGCCCCCGCCTTCTTTTGATACAACCATGATGCCTAAAAACCCTACTGGCTTTCAA
GTCAGCCGCTACAGCGTAACTGAAATGCAAGATCTAAAAACCCTCAAACCCTAA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(54-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

52.033

95.72

0.498

Multiple sequence alignment