Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   RNT94_RS03730 Genome accession   NZ_CP134803
Coordinates   757649..758422 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain SA85_2     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 752649..763422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RNT94_RS03710 trmFO 752993..754300 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  RNT94_RS03715 xerC 754717..755613 (+) 897 WP_001015606.1 tyrosine recombinase XerC -
  RNT94_RS03720 hslV 755610..756155 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  RNT94_RS03725 hslU 756221..757624 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  RNT94_RS03730 codY 757649..758422 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  RNT94_RS03735 - 758473..758565 (+) 93 WP_001790530.1 hypothetical protein -
  RNT94_RS03740 rpsB 758764..759531 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  RNT94_RS03745 - 759565..759678 (+) 114 WP_001789890.1 hypothetical protein -
  RNT94_RS03750 tsf 759713..760594 (+) 882 WP_000201387.1 translation elongation factor Ts -
  RNT94_RS03755 pyrH 760731..761453 (+) 723 WP_000057330.1 UMP kinase -
  RNT94_RS03760 frr 761472..762026 (+) 555 WP_001280006.1 ribosome recycling factor -
  RNT94_RS03765 - 762399..763169 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=808052 RNT94_RS03730 WP_000055337.1 757649..758422(+) (codY) [Staphylococcus aureus strain SA85_2]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=808052 RNT94_RS03730 WP_000055337.1 757649..758422(+) (codY) [Staphylococcus aureus strain SA85_2]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTTATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAG

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428