Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   RNU01_RS07825 Genome accession   NZ_CP134801
Coordinates   1534742..1535515 (-) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain SA73_2     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1529742..1540515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RNU01_RS07790 - 1529995..1530765 (-) 771 WP_000473699.1 isoprenyl transferase -
  RNU01_RS07795 frr 1531138..1531692 (-) 555 WP_001280004.1 ribosome recycling factor -
  RNU01_RS07800 pyrH 1531711..1532433 (-) 723 WP_000057330.1 UMP kinase -
  RNU01_RS07805 tsf 1532570..1533451 (-) 882 WP_000201387.1 translation elongation factor Ts -
  RNU01_RS07810 - 1533486..1533599 (-) 114 WP_001789890.1 hypothetical protein -
  RNU01_RS07815 rpsB 1533633..1534400 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  RNU01_RS07820 - 1534599..1534691 (-) 93 WP_001790530.1 hypothetical protein -
  RNU01_RS07825 codY 1534742..1535515 (-) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  RNU01_RS07830 hslU 1535540..1536943 (-) 1404 WP_024946837.1 ATP-dependent protease ATPase subunit HslU -
  RNU01_RS07835 hslV 1537009..1537554 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  RNU01_RS07840 xerC 1537551..1538447 (-) 897 WP_001015597.1 tyrosine recombinase XerC -
  RNU01_RS07845 trmFO 1538864..1540171 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=807986 RNU01_RS07825 WP_000055337.1 1534742..1535515(-) (codY) [Staphylococcus aureus strain SA73_2]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=807986 RNU01_RS07825 WP_000055337.1 1534742..1535515(-) (codY) [Staphylococcus aureus strain SA73_2]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACTATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTAGGCGGTACGGAAGGTCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428