Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HXS60_RS01990 Genome accession   NZ_AP023042
Coordinates   394844..395110 (-) Length   88 a.a.
NCBI ID   WP_034376157.1    Uniprot ID   A0A6J4CZW2
Organism   Helicobacter suis strain NHP19-4004     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 389844..400110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXS60_RS01970 (NHP194004_04010) - 390650..392956 (-) 2307 WP_232087246.1 TonB-dependent receptor family protein -
  HXS60_RS01975 (NHP194004_04020) fliW 393100..393507 (+) 408 WP_006564742.1 flagellar assembly protein FliW -
  HXS60_RS01980 (NHP194004_04030) murG 393509..394591 (+) 1083 WP_064430110.1 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase -
  HXS60_RS01985 (NHP194004_04040) comB3 394574..394843 (-) 270 WP_034376154.1 hypothetical protein Machinery gene
  HXS60_RS01990 (NHP194004_04050) comB2 394844..395110 (-) 267 WP_034376157.1 TrbC/VirB2 family protein Machinery gene
  HXS60_RS01995 (NHP194004_04060) - 395404..396189 (+) 786 WP_006565183.1 HrcA family transcriptional regulator -
  HXS60_RS02000 (NHP194004_04070) grpE 396186..396716 (+) 531 WP_006565184.1 nucleotide exchange factor GrpE -
  HXS60_RS02005 (NHP194004_04080) dnaK 396738..398603 (+) 1866 WP_040499279.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 10204.24 Da        Isoelectric Point: 7.9878

>NTDB_id=80789 HXS60_RS01990 WP_034376157.1 394844..395110(-) (comB2) [Helicobacter suis strain NHP19-4004]
MRFLWVFCVVFALLRAEGSDSFFQAIEEQLQSNTAKGILMVIFIGIAFYVWRNLDRWRDILFTVLGVVLGIMLFFKAPAL
ASWFMGLF

Nucleotide


Download         Length: 267 bp        

>NTDB_id=80789 HXS60_RS01990 WP_034376157.1 394844..395110(-) (comB2) [Helicobacter suis strain NHP19-4004]
GTGCGGTTTTTATGGGTTTTTTGTGTGGTTTTTGCCCTTTTAAGGGCTGAGGGGAGCGATAGTTTTTTTCAAGCCATTGA
AGAACAACTCCAAAGCAATACGGCTAAGGGTATTTTAATGGTGATCTTTATTGGCATTGCCTTTTATGTGTGGCGCAATT
TAGATCGCTGGCGGGATATTTTATTCACGGTCTTAGGCGTAGTTTTGGGAATCATGCTTTTTTTCAAAGCCCCCGCTTTA
GCTTCGTGGTTTATGGGACTCTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(17-84)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6J4CZW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

74.667

85.227

0.636

Multiple sequence alignment