Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | HXS57_RS01990 | Genome accession | NZ_AP023039 |
| Coordinates | 394200..394469 (-) | Length | 89 a.a. |
| NCBI ID | WP_034376154.1 | Uniprot ID | A0A6J4CZS1 |
| Organism | Helicobacter suis strain NHP19-4003 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 389200..399469
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HXS57_RS01975 (NHP194003_04030) | - | 390275..392551 (-) | 2277 | WP_176485814.1 | TonB-dependent receptor family protein | - |
| HXS57_RS01980 (NHP194003_04040) | fliW | 392726..393133 (+) | 408 | WP_006564742.1 | flagellar assembly protein FliW | - |
| HXS57_RS01985 (NHP194003_04050) | murG | 393135..394217 (+) | 1083 | WP_006565182.1 | undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase | - |
| HXS57_RS01990 (NHP194003_04060) | comB3 | 394200..394469 (-) | 270 | WP_034376154.1 | hypothetical protein | Machinery gene |
| HXS57_RS01995 (NHP194003_04070) | comB2 | 394470..394736 (-) | 267 | WP_034376157.1 | TrbC/VirB2 family protein | Machinery gene |
| HXS57_RS02000 (NHP194003_04080) | - | 395030..395815 (+) | 786 | WP_006565183.1 | HrcA family transcriptional regulator | - |
| HXS57_RS02005 (NHP194003_04090) | grpE | 395812..396342 (+) | 531 | WP_006565184.1 | nucleotide exchange factor GrpE | - |
| HXS57_RS02010 (NHP194003_04100) | dnaK | 396364..398229 (+) | 1866 | WP_040499279.1 | molecular chaperone DnaK | - |
Sequence
Protein
Download Length: 89 a.a. Molecular weight: 10325.31 Da Isoelectric Point: 7.9966
>NTDB_id=80768 HXS57_RS01990 WP_034376154.1 394200..394469(-) (comB3) [Helicobacter suis strain NHP19-4003]
MHYPLLVVSVPNLKEISTKEKFLWLNAKSWIVSIFIPFICWPWLGTLATLFFYAGFLLLFSVLEFFDEDIADILIARSKL
KTKASSFYA
MHYPLLVVSVPNLKEISTKEKFLWLNAKSWIVSIFIPFICWPWLGTLATLFFYAGFLLLFSVLEFFDEDIADILIARSKL
KTKASSFYA
Nucleotide
Download Length: 270 bp
>NTDB_id=80768 HXS57_RS01990 WP_034376154.1 394200..394469(-) (comB3) [Helicobacter suis strain NHP19-4003]
ATGCATTATCCCTTATTAGTGGTTTCTGTCCCTAATCTTAAAGAGATTTCTACCAAAGAAAAATTTCTCTGGCTCAATGC
TAAATCATGGATTGTCTCTATTTTTATCCCTTTTATATGCTGGCCATGGCTTGGTACTCTAGCGACGCTATTTTTTTATG
CGGGTTTTTTATTGCTCTTTAGCGTGTTAGAGTTTTTTGATGAAGACATTGCTGATATTTTAATTGCTCGCTCTAAACTT
AAGACAAAAGCTTCAAGCTTTTACGCCTGA
ATGCATTATCCCTTATTAGTGGTTTCTGTCCCTAATCTTAAAGAGATTTCTACCAAAGAAAAATTTCTCTGGCTCAATGC
TAAATCATGGATTGTCTCTATTTTTATCCCTTTTATATGCTGGCCATGGCTTGGTACTCTAGCGACGCTATTTTTTTATG
CGGGTTTTTTATTGCTCTTTAGCGTGTTAGAGTTTTTTGATGAAGACATTGCTGATATTTTAATTGCTCGCTCTAAACTT
AAGACAAAAGCTTCAAGCTTTTACGCCTGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
62.353 |
95.506 |
0.596 |