Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   P3X63_RS15105 Genome accession   NZ_CP120679
Coordinates   2925502..2927862 (-) Length   786 a.a.
NCBI ID   WP_277691286.1    Uniprot ID   -
Organism   Bacillus sp. HSf4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2920502..2932862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3X63_RS15085 (P3X63_15085) - 2920565..2922136 (+) 1572 WP_277691281.1 SH3 domain-containing protein -
  P3X63_RS15090 (P3X63_15090) dtd 2922162..2922605 (-) 444 WP_026588078.1 D-aminoacyl-tRNA deacylase -
  P3X63_RS15095 (P3X63_15095) - 2922618..2924819 (-) 2202 WP_026588079.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  P3X63_RS15100 (P3X63_15100) - 2924984..2925496 (-) 513 WP_026588080.1 adenine phosphoribosyltransferase -
  P3X63_RS15105 (P3X63_15105) recJ 2925502..2927862 (-) 2361 WP_277691286.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  P3X63_RS15110 (P3X63_15110) - 2927916..2928224 (-) 309 WP_026588082.1 lipopolysaccharide assembly LapA domain-containing protein -
  P3X63_RS15115 (P3X63_15115) secDF 2928375..2930600 (-) 2226 WP_277691289.1 protein translocase subunit SecDF -
  P3X63_RS15120 (P3X63_15120) - 2930639..2930935 (-) 297 WP_026588084.1 post-transcriptional regulator -
  P3X63_RS15125 (P3X63_15125) spoVB 2931052..2932605 (+) 1554 WP_277691291.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 88295.97 Da        Isoelectric Point: 5.1460

>NTDB_id=807678 P3X63_RS15105 WP_277691286.1 2925502..2927862(-) (recJ) [Bacillus sp. HSf4]
MLASKMRWDVKTPDKEKVELLSEQLGITPLAASLLVMRGYDTADKAASFLYGKDAVFYDPYLLKDMEKAVQRIKQAISEN
EKIMIYGDYDADGVTSTTVLLQILKKYSAQADFYIPDRFKEGYGPNEAAFRHIKEQGYSLIVTVDTGIAGVHEAEVAKEL
GIDLIITDHHEPGPVLPDAYAIIHPKQPGCSYPFKELAGVGVAFKLAHALNGDIPEDLLDLCAIGTIADLVPLHDENRHI
AKLGMARFRKTNRPGLKALAKIAGAEIQSADEETIGFQIAPRINAVGRIVQADPAVYLLNTEDDTEAGELAEEINALNKE
RQKIVNQITEEAVQMIEDEGLDQSVIVCARAGWNPGVVGIVASKLVERFYRPAIVLGIDEEKGIAKGSARSIKGFDLFQN
LSECRDILPHFGGHPMAAGMTLSQEDVPLLRERINRQAEAVLTAEDFIPVQEVDLCCRLEDITVDSIAEMNKLAPFGTGN
PKPFVLVSDAKIDEARKIGANQNHLKLVLADEGTKLDCVGFYKGDIEEKIVSGANISIVGELSINEWNNRKKPQLMIKDA
AVNEWQLFDFRGKRSWKEKILKLDPAKRIFLCFREETKTTFAGTELADELIFISGEEEAKRLDLHNRYAVFIDTPQSLER
FDHAVKGKKLERIYLIFHQSDEHFFSTFPTRDHFKWYYAFLLKRGSFDLAKYAGELARHKGWTKDTIDFMTKVFFELGFV
TIENGVLSVKFDAAKRDLTESDTYREKQRLIELEQKLVYSSADELKQWLNKLMGESAEAYESMRRT

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=807678 P3X63_RS15105 WP_277691286.1 2925502..2927862(-) (recJ) [Bacillus sp. HSf4]
ATGTTAGCGTCAAAAATGCGTTGGGATGTGAAAACACCCGACAAAGAAAAGGTGGAGCTGCTCTCCGAACAGTTGGGTAT
CACTCCCCTTGCCGCCTCGTTGCTTGTCATGAGAGGCTACGATACAGCAGACAAAGCAGCTTCATTTTTGTACGGCAAAG
ATGCTGTCTTTTATGATCCTTATCTGCTTAAAGATATGGAGAAAGCTGTACAGCGAATCAAACAGGCCATTTCAGAAAAT
GAAAAGATTATGATTTATGGAGATTATGATGCGGACGGTGTGACAAGCACGACTGTCCTCCTGCAGATCTTAAAAAAATA
TTCAGCTCAAGCCGATTTTTATATACCTGACCGCTTTAAAGAAGGCTACGGCCCGAATGAAGCCGCATTCCGGCATATAA
AGGAACAGGGCTATTCACTGATTGTCACGGTGGATACGGGGATTGCCGGTGTTCACGAAGCAGAGGTCGCAAAAGAGCTC
GGCATCGACTTGATTATTACCGATCACCATGAGCCTGGTCCGGTTTTGCCTGACGCCTATGCGATCATTCATCCGAAGCA
GCCCGGATGCAGCTATCCTTTCAAAGAGCTGGCCGGCGTCGGGGTCGCATTTAAGCTTGCCCATGCTTTGAACGGCGACA
TTCCTGAGGACCTTCTTGATCTTTGTGCGATCGGAACGATTGCCGATCTTGTGCCGCTTCATGATGAAAACAGGCACATC
GCCAAGCTCGGGATGGCCCGGTTTAGAAAGACGAACCGCCCCGGCTTAAAAGCGCTCGCGAAGATTGCGGGAGCCGAGAT
TCAAAGCGCGGATGAAGAGACGATCGGGTTTCAAATTGCTCCGCGAATCAATGCCGTCGGCCGAATCGTTCAGGCTGATC
CGGCTGTTTATCTTTTAAACACAGAAGATGACACAGAAGCCGGGGAGCTGGCTGAAGAAATTAACGCACTGAACAAAGAA
CGGCAAAAAATCGTCAACCAGATCACAGAAGAAGCGGTCCAAATGATAGAGGACGAGGGTCTGGACCAGTCTGTCATCGT
CTGTGCGCGGGCCGGCTGGAATCCGGGCGTTGTCGGGATCGTCGCCTCCAAGCTGGTCGAACGGTTTTACCGGCCGGCCA
TCGTTCTCGGAATTGATGAAGAAAAAGGGATTGCCAAAGGCTCTGCGCGCAGCATTAAAGGCTTTGACCTGTTTCAAAAC
CTTTCGGAATGCCGGGATATCCTTCCCCATTTTGGCGGCCACCCGATGGCGGCCGGAATGACGCTCAGCCAGGAAGATGT
TCCGCTATTAAGAGAACGAATCAACCGCCAGGCTGAAGCTGTTTTAACAGCGGAAGACTTCATTCCCGTCCAGGAAGTCG
ACCTTTGCTGCCGATTGGAAGATATTACGGTGGACAGCATCGCAGAAATGAACAAGCTGGCTCCGTTCGGCACGGGAAAC
CCGAAGCCGTTCGTCCTTGTCAGCGACGCCAAAATTGATGAGGCGAGAAAAATCGGCGCCAATCAGAATCACCTAAAGCT
CGTGTTGGCAGACGAAGGGACAAAGCTTGATTGTGTCGGATTCTATAAAGGTGATATCGAAGAAAAAATCGTATCCGGCG
CAAACATTTCCATTGTCGGCGAATTGTCGATCAATGAATGGAATAACAGAAAAAAGCCGCAGCTCATGATCAAGGATGCG
GCCGTAAACGAATGGCAGCTGTTTGACTTCCGGGGAAAGCGTTCATGGAAAGAAAAAATCTTAAAGCTTGATCCGGCAAA
ACGGATATTCCTTTGTTTCCGGGAAGAAACGAAAACGACATTTGCGGGAACTGAGCTCGCAGATGAGCTGATCTTCATCA
GCGGGGAAGAGGAGGCAAAGCGTCTCGATCTACATAACCGTTATGCGGTTTTCATTGACACGCCCCAGTCGCTTGAGAGG
TTCGACCATGCTGTAAAAGGCAAAAAGCTTGAGCGGATTTATCTGATTTTTCATCAGTCTGACGAGCATTTTTTCTCGAC
GTTTCCAACGAGGGATCATTTCAAATGGTACTACGCTTTCCTTCTCAAACGAGGCTCGTTTGACTTAGCAAAATACGCCG
GAGAGCTTGCCAGACATAAAGGCTGGACAAAAGACACAATTGATTTTATGACAAAGGTGTTTTTTGAGCTCGGTTTTGTT
ACAATAGAGAATGGTGTTTTATCTGTTAAATTCGATGCCGCGAAGCGGGATTTAACAGAATCTGACACTTACCGTGAAAA
ACAGCGCCTGATTGAATTGGAGCAAAAGCTCGTCTATTCTTCGGCGGACGAGCTCAAACAGTGGCTGAATAAGCTGATGG
GCGAAAGCGCTGAAGCTTATGAAAGTATGAGGAGGACATGA

Domains

Predicted by InterproScan.

DHH family (DHH)

(82-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

DHHA1 domain (DHHA1)

(315-436)

RecJ OB domain (RecJ_OB)

(453-559)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

68.702

100

0.687