Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   P3X63_RS15030 Genome accession   NZ_CP120679
Coordinates   2907863..2910235 (-) Length   790 a.a.
NCBI ID   WP_277692935.1    Uniprot ID   -
Organism   Bacillus sp. HSf4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2902863..2915235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3X63_RS15010 (P3X63_15010) - 2905806..2906864 (-) 1059 WP_277691263.1 AI-2E family transporter -
  P3X63_RS15015 (P3X63_15015) - 2906955..2907086 (-) 132 WP_077736334.1 YrzQ family protein -
  P3X63_RS15020 (P3X63_15020) - 2907102..2907293 (-) 192 WP_006637793.1 hypothetical protein -
  P3X63_RS15025 (P3X63_15025) - 2907309..2907773 (-) 465 WP_026588067.1 PRC-barrel domain-containing protein -
  P3X63_RS15030 (P3X63_15030) recD2 2907863..2910235 (-) 2373 WP_277692935.1 ATP-dependent RecD-like DNA helicase Machinery gene
  P3X63_RS15035 (P3X63_15035) - 2910306..2910956 (-) 651 WP_026588069.1 tetratricopeptide repeat protein -
  P3X63_RS15040 (P3X63_15040) mnmA 2911054..2912172 (-) 1119 WP_277691269.1 tRNA 2-thiouridine(34) synthase MnmA -
  P3X63_RS15045 (P3X63_15045) - 2912256..2913395 (-) 1140 WP_277691271.1 cysteine desulfurase family protein -
  P3X63_RS15050 (P3X63_15050) cymR 2913415..2913831 (-) 417 WP_026588072.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 790 a.a.        Molecular weight: 89021.63 Da        Isoelectric Point: 4.9445

>NTDB_id=807677 P3X63_RS15030 WP_277692935.1 2907863..2910235(-) (recD2) [Bacillus sp. HSf4]
MQMEEASFLKGTVTGVIYHNETNLYTVLKVKVQETSESFEEKSVSVTGYFPAVFEDETYTFYGKTASHPKFGLQFQADHF
KKEVPTTKEGVIQYLASDLFEGIGKKTAEEIVKKLGEGAINKILEDAAVLYDVPKLSKKKADKLASSLQQHQGLEQIMIS
LSEFGFGPQLSMKIYQAYESETLDKIRENPYQLVKDVEGIGFIKADELGGRMGISGKHAERIKAALLYTIEAACLQEGHT
YIETKQLIIETQKLLNQSAGDEKVTEMDVADQIIALGEQKELFVEDDRCYYPSLYYAEQNFAKRVRKIAEQTEYDEQFPE
SEFLLALGELEERMQVQYAPSQKEAIQKALMSPMLLLTGGPGTGKTTVIRGIVELYSELHGLSLNPADYKKDETFPFVLA
APTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTHDEDNPIEGKLVIIDETSMLDIWLANQLFKAIPDHLQVIMVGDEDQ
LPSVGPGQVLRDLLASNVIPAVRLTDIYRQAEGSSIVEMAHEMKKGYLPKNLTAPTKDRSFIRCRQQQIKEVVEKVVKNA
LQKGYSARDIQVLAPMYKGPAGINELNLTLQNILNPPKPKGREIKFGEVVYRTGDKILQLVNQPEHNVFNGDMGEIVSIF
YAKENTEKEDMAVISFDGNEITFTKKDFNQFTHAYCCSIHKSQGSEFPIVILPIVKSYYRMLRRNLLYTAITRSKKFLIL
CGEEEALEWGVRNKESSERQTSLKRRLQQAAHEEDEELMALQKELPFSVFDANIGMEGVTPFDFMEEEAE

Nucleotide


Download         Length: 2373 bp        

>NTDB_id=807677 P3X63_RS15030 WP_277692935.1 2907863..2910235(-) (recD2) [Bacillus sp. HSf4]
ATGCAAATGGAAGAAGCCTCTTTTCTGAAAGGGACGGTAACGGGTGTCATTTATCATAATGAAACAAACCTCTACACCGT
CCTAAAAGTAAAAGTGCAGGAAACATCGGAGTCTTTTGAAGAAAAAAGCGTTTCAGTAACGGGATACTTCCCTGCGGTCT
TTGAAGATGAAACCTATACATTTTACGGAAAAACCGCCTCCCATCCGAAGTTTGGCCTGCAATTTCAAGCGGATCATTTT
AAAAAAGAAGTTCCCACGACAAAAGAAGGCGTCATTCAGTATTTAGCAAGCGATTTGTTTGAAGGCATCGGCAAAAAAAC
GGCCGAAGAGATCGTCAAAAAGCTTGGAGAGGGTGCGATCAATAAAATTTTAGAGGACGCTGCCGTCCTGTATGATGTGC
CAAAGCTCTCCAAAAAAAAGGCGGATAAGCTTGCCTCAAGCCTTCAGCAGCATCAGGGACTTGAGCAGATTATGATCTCC
TTGAGTGAATTCGGCTTCGGGCCGCAGCTTTCCATGAAAATTTACCAGGCATACGAATCGGAAACCCTTGATAAAATCCG
GGAAAATCCGTACCAGCTTGTCAAGGATGTGGAAGGCATCGGCTTTATCAAGGCAGATGAACTAGGCGGAAGAATGGGGA
TTTCAGGCAAACATGCCGAACGGATCAAGGCGGCGCTTTTATATACGATTGAAGCGGCATGCCTTCAGGAAGGACATACG
TACATAGAAACCAAGCAGCTGATCATCGAGACGCAAAAGCTGTTGAACCAGTCGGCAGGCGATGAGAAAGTGACGGAAAT
GGATGTGGCGGATCAAATCATTGCGCTTGGCGAGCAAAAAGAACTTTTCGTAGAAGACGACAGATGCTACTATCCATCGC
TTTACTACGCTGAACAAAACTTTGCCAAAAGAGTCCGGAAGATCGCCGAACAGACCGAATACGATGAGCAGTTTCCCGAA
TCTGAATTTCTGCTTGCTTTAGGCGAGCTTGAAGAGCGGATGCAGGTTCAATATGCACCAAGCCAAAAGGAAGCGATACA
AAAGGCGCTGATGTCGCCGATGCTGCTTTTAACAGGCGGCCCCGGCACGGGTAAAACGACCGTCATCAGAGGAATCGTTG
AATTGTACAGCGAGCTTCACGGCTTGAGTCTGAATCCCGCCGATTATAAGAAAGACGAAACCTTTCCGTTTGTATTGGCT
GCGCCCACAGGAAGAGCGGCAAAACGGATGAGCGAGTCGACAGGTCTCCCGGCTGTCACGATCCACAGACTTCTCGGCTG
GAACGGCGCCGAAGGTTTTACACATGATGAAGACAACCCGATCGAAGGGAAGCTGGTCATCATCGATGAAACGAGCATGC
TTGATATATGGCTGGCCAACCAATTGTTTAAAGCGATTCCCGATCATTTACAGGTGATTATGGTCGGGGATGAAGACCAG
CTCCCGTCCGTCGGTCCTGGACAGGTGCTGAGAGACCTGCTCGCATCAAACGTGATCCCGGCTGTCAGACTAACCGATAT
TTACAGGCAGGCCGAAGGGTCGTCCATTGTGGAAATGGCGCATGAAATGAAAAAAGGCTACCTCCCGAAAAATTTGACGG
CGCCGACGAAAGACCGCTCTTTTATCCGCTGCCGCCAACAGCAGATCAAGGAGGTTGTAGAAAAAGTCGTCAAAAATGCG
CTGCAAAAAGGGTATTCAGCACGGGACATTCAAGTGCTTGCCCCGATGTACAAAGGACCGGCCGGTATCAATGAATTGAA
CTTGACCCTGCAAAACATCCTGAATCCGCCGAAACCGAAGGGCAGAGAAATCAAATTCGGGGAAGTCGTATACCGGACGG
GCGATAAAATTCTTCAGCTTGTCAACCAGCCTGAACACAATGTATTCAACGGCGACATGGGCGAGATCGTCTCCATCTTT
TATGCAAAAGAAAACACGGAAAAAGAAGATATGGCGGTCATCTCTTTTGACGGCAACGAAATCACATTTACCAAAAAAGA
TTTTAACCAATTTACACATGCGTATTGCTGCTCGATTCACAAATCGCAGGGCAGCGAATTCCCGATCGTGATTCTTCCCA
TTGTCAAAAGCTATTACAGGATGCTGAGAAGAAACCTGCTGTATACAGCCATCACAAGAAGCAAAAAATTCCTGATTTTG
TGCGGAGAAGAGGAGGCTCTTGAATGGGGCGTCAGAAATAAAGAATCCTCGGAACGGCAGACGTCTCTTAAAAGAAGGCT
GCAACAGGCCGCCCATGAAGAAGATGAAGAGCTGATGGCGCTCCAAAAGGAACTGCCTTTCAGCGTATTTGACGCCAATA
TCGGAATGGAGGGTGTCACACCGTTTGATTTTATGGAAGAAGAGGCGGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(338-546)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(586-652)

Helix-hairpin-helix containing domain (HHH_RecD2)

(151-241)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(673-721)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

82.129

99.873

0.82