Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   P3X63_RS09210 Genome accession   NZ_CP120679
Coordinates   1803895..1804674 (+) Length   259 a.a.
NCBI ID   WP_006638180.1    Uniprot ID   A0A6I7F231
Organism   Bacillus sp. HSf4     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1798895..1809674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3X63_RS09190 (P3X63_09190) trmFO 1799595..1800899 (+) 1305 WP_026586955.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  P3X63_RS09195 (P3X63_09195) xerC 1800966..1801880 (+) 915 WP_026586956.1 tyrosine recombinase XerC -
  P3X63_RS09200 (P3X63_09200) hslV 1801894..1802439 (+) 546 WP_026586957.1 ATP-dependent protease subunit HslV -
  P3X63_RS09205 (P3X63_09205) hslU 1802447..1803856 (+) 1410 WP_256860410.1 HslU--HslV peptidase ATPase subunit -
  P3X63_RS09210 (P3X63_09210) codY 1803895..1804674 (+) 780 WP_006638180.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  P3X63_RS09215 (P3X63_09215) flgB 1805031..1805420 (+) 390 WP_026586959.1 flagellar basal body rod protein FlgB -
  P3X63_RS09220 (P3X63_09220) flgC 1805420..1805872 (+) 453 WP_026586960.1 flagellar basal body rod protein FlgC -
  P3X63_RS09225 (P3X63_09225) fliE 1805886..1806197 (+) 312 WP_026586961.1 flagellar hook-basal body complex protein FliE -
  P3X63_RS09230 (P3X63_09230) fliF 1806249..1807850 (+) 1602 WP_026586962.1 flagellar basal-body MS-ring/collar protein FliF -
  P3X63_RS09235 (P3X63_09235) fliG 1807864..1808880 (+) 1017 WP_026586963.1 flagellar motor switch protein FliG -
  P3X63_RS09240 (P3X63_09240) fliH 1808864..1809634 (+) 771 WP_077736845.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29087.45 Da        Isoelectric Point: 4.8196

>NTDB_id=807661 P3X63_RS09210 WP_006638180.1 1803895..1804674(+) (codY) [Bacillus sp. HSf4]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=807661 P3X63_RS09210 WP_006638180.1 1803895..1804674(+) (codY) [Bacillus sp. HSf4]
ATGGCTTTATTACAAAAAACGAGAAAGATTAATGCAATGCTGCAAAACGCGGCAGGGAAGCCGGTTAATTTCAAAGAAAT
GGCCGAAACGCTTCGCGATGTGATCGATTCAAACATTTTCGTTGTCAGCCGGAGAGGAAAACTGCTCGGCTTCTCCATTA
ATCAGCAAATTGAAAACGACCGAATGAAAAAAATGCTTGAGGAGCGCCAATTTCCTGAAGATTATACGAAAAGCCTATTC
AACATTCCGGAAACATCATCCAACCTGGACATCAACAGTGAATACACGGCATTCCCTGTAGAAAACCGCGACCTTTTCCA
AGCGGGTCTGACGACCATCGTTCCGATTATCGGCGGAGGCGAGAGATTGGGAACCTTAATTCTTTCCCGTCTTCAGGAAA
AGTTTGAAGATGACGATCTCATTCTTGCCGAATACGGGGCAACGGTTGTCGGAATGGAGATTCTGAGAGAGAAAGCCGAA
GAAATCGAAGAGGAAGCCCGCAGCAAGGCAGTCGTACAAATGGCCATCAGCTCATTATCATACAGTGAGCTTGAAGCGAT
CGAACATATTTTTGAAGAACTTGACGGCAACGAAGGCCTTCTTGTTGCAAGCAAAATTGCCGACCGCGTCGGCATCACGC
GCTCGGTTATCGTAAACGCACTCCGCAAGCTGGAAAGCGCGGGTGTCATCGAGTCGAGGTCACTGGGGATGAAGGGCACA
TATATAAAAGTCCTAAACAACAAATTCCTGATGGAATTAGAAAAATTAAAATCGCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I7F231

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

94.981

100

0.95
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467