Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | HXS58_RS02725 | Genome accession | NZ_AP023036 |
| Coordinates | 537884..538153 (-) | Length | 89 a.a. |
| NCBI ID | WP_034376154.1 | Uniprot ID | A0A6J4CZS1 |
| Organism | Helicobacter suis strain NHP19-0020 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 532884..543153
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HXS58_RS02710 (NHP190020_05840) | - | 533960..536266 (-) | 2307 | WP_232087246.1 | TonB-dependent receptor family protein | - |
| HXS58_RS02715 (NHP190020_05850) | fliW | 536410..536817 (+) | 408 | WP_006564742.1 | flagellar assembly protein FliW | - |
| HXS58_RS02720 (NHP190020_05860) | murG | 536819..537901 (+) | 1083 | WP_006565182.1 | undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase | - |
| HXS58_RS02725 (NHP190020_05870) | comB3 | 537884..538153 (-) | 270 | WP_034376154.1 | hypothetical protein | Machinery gene |
| HXS58_RS02730 (NHP190020_05880) | comB2 | 538154..538420 (-) | 267 | WP_034376157.1 | TrbC/VirB2 family protein | Machinery gene |
| HXS58_RS02735 (NHP190020_05890) | - | 538714..539499 (+) | 786 | WP_006565183.1 | HrcA family transcriptional regulator | - |
| HXS58_RS02740 (NHP190020_05900) | grpE | 539496..540026 (+) | 531 | WP_006565184.1 | nucleotide exchange factor GrpE | - |
| HXS58_RS02745 (NHP190020_05910) | dnaK | 540048..541913 (+) | 1866 | WP_040499279.1 | molecular chaperone DnaK | - |
Sequence
Protein
Download Length: 89 a.a. Molecular weight: 10325.31 Da Isoelectric Point: 7.9966
>NTDB_id=80752 HXS58_RS02725 WP_034376154.1 537884..538153(-) (comB3) [Helicobacter suis strain NHP19-0020]
MHYPLLVVSVPNLKEISTKEKFLWLNAKSWIVSIFIPFICWPWLGTLATLFFYAGFLLLFSVLEFFDEDIADILIARSKL
KTKASSFYA
MHYPLLVVSVPNLKEISTKEKFLWLNAKSWIVSIFIPFICWPWLGTLATLFFYAGFLLLFSVLEFFDEDIADILIARSKL
KTKASSFYA
Nucleotide
Download Length: 270 bp
>NTDB_id=80752 HXS58_RS02725 WP_034376154.1 537884..538153(-) (comB3) [Helicobacter suis strain NHP19-0020]
ATGCATTATCCCTTATTAGTGGTTTCTGTCCCTAATCTTAAAGAGATTTCTACCAAAGAAAAATTTCTCTGGCTCAATGC
TAAATCATGGATTGTCTCTATTTTTATCCCTTTTATATGCTGGCCATGGCTTGGTACTCTAGCGACGCTATTTTTTTATG
CGGGTTTTTTATTGCTCTTTAGCGTGTTAGAGTTTTTTGATGAAGACATTGCTGATATTTTAATTGCTCGCTCTAAACTT
AAGACAAAAGCTTCAAGCTTTTACGCCTGA
ATGCATTATCCCTTATTAGTGGTTTCTGTCCCTAATCTTAAAGAGATTTCTACCAAAGAAAAATTTCTCTGGCTCAATGC
TAAATCATGGATTGTCTCTATTTTTATCCCTTTTATATGCTGGCCATGGCTTGGTACTCTAGCGACGCTATTTTTTTATG
CGGGTTTTTTATTGCTCTTTAGCGTGTTAGAGTTTTTTGATGAAGACATTGCTGATATTTTAATTGCTCGCTCTAAACTT
AAGACAAAAGCTTCAAGCTTTTACGCCTGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
62.353 |
95.506 |
0.596 |