Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   P6S76_RS08110 Genome accession   NZ_CP120641
Coordinates   1643824..1644603 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain YL2021     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1638824..1649603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P6S76_RS08090 trmFO 1639511..1640818 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  P6S76_RS08095 xerC 1640888..1641805 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  P6S76_RS08100 hslV 1641821..1642366 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  P6S76_RS08105 hslU 1642374..1643786 (+) 1413 WP_256052823.1 HslU--HslV peptidase ATPase subunit -
  P6S76_RS08110 codY 1643824..1644603 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  P6S76_RS08115 flgB 1644957..1645346 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  P6S76_RS08120 flgC 1645346..1645798 (+) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  P6S76_RS08125 fliE 1645809..1646129 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  P6S76_RS08130 fliF 1646172..1647782 (+) 1611 WP_007409778.1 flagellar basal-body MS-ring/collar protein FliF -
  P6S76_RS08135 fliG 1647795..1648811 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  P6S76_RS08140 fliH 1648804..1649559 (+) 756 WP_007409779.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=807404 P6S76_RS08110 WP_003154263.1 1643824..1644603(+) (codY) [Bacillus velezensis strain YL2021]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=807404 P6S76_RS08110 WP_003154263.1 1643824..1644603(+) (codY) [Bacillus velezensis strain YL2021]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCCGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAATGCGCTGAGAAAGCTGGAAAGCGCAGGTGTCATTGAATCCAGATCACTAGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471