Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   OO879_RS20825 Genome accession   NZ_AP026118
Coordinates   4124842..4125309 (+) Length   155 a.a.
NCBI ID   WP_000381746.1    Uniprot ID   Q8X892
Organism   Escherichia coli strain CEC13004     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4119842..4130309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO879_RS20780 (CEC13004_39960) rplP 4119952..4120362 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  OO879_RS20785 (CEC13004_39970) rpsC 4120375..4121076 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  OO879_RS20790 (CEC13004_39980) rplV 4121094..4121426 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  OO879_RS20795 (CEC13004_39990) rpsS 4121441..4121719 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  OO879_RS20800 (CEC13004_40000) rplB 4121736..4122557 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  OO879_RS20805 (CEC13004_40010) rplW 4122575..4122877 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  OO879_RS20810 (CEC13004_40020) rplD 4122874..4123479 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  OO879_RS20815 (CEC13004_40030) rplC 4123490..4124119 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  OO879_RS20820 (CEC13004_40040) rpsJ 4124152..4124463 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  OO879_RS20825 (CEC13004_40050) pilD 4124842..4125309 (+) 468 WP_000381746.1 A24 family peptidase Machinery gene
  OO879_RS20830 (CEC13004_40060) bfr 4125306..4125782 (-) 477 WP_000675516.1 bacterioferritin -
  OO879_RS20835 (CEC13004_40070) bfd 4125855..4126049 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  OO879_RS20840 (CEC13004_40080) tuf 4126232..4127416 (-) 1185 WP_000031783.1 elongation factor Tu -
  OO879_RS20845 (CEC13004_40090) fusA 4127487..4129601 (-) 2115 WP_000124700.1 elongation factor G -
  OO879_RS20850 (CEC13004_40100) rpsG 4129698..4130168 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17099.29 Da        Isoelectric Point: 8.1343

>NTDB_id=80737 OO879_RS20825 WP_000381746.1 4124842..4125309(+) (pilD) [Escherichia coli strain CEC13004]
MDTTLPFLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCHPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHSWAFLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLAAAGFVIGWDSLLIGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=80737 OO879_RS20825 WP_000381746.1 4124842..4125309(+) (pilD) [Escherichia coli strain CEC13004]
ATGGACACTACCCTTCCCTTTCTAATTTTGTACGCTTGTTTATCAGCCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACGTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTATCAAGTTTGTCATCCTGATGGTTTAGCCG
ATGCGTTATGGGGGGCAATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGCCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGCGCCTGGCATTCATGGGCCTTCTTACCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTATTGGTCTGCTCATGAGAGGAAAAGAATCATTAAAAAACCCGCTGC
CTTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTATAGGCTGGGATAGTTTGCTGATAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(11-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8X892

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

43.478

89.032

0.387