Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   P5623_RS06860 Genome accession   NZ_CP120625
Coordinates   1198117..1198896 (-) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus altitudinis strain DSM 103869     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1193117..1203896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5623_RS06830 (P5623_06830) fliH 1193230..1193994 (-) 765 WP_048002828.1 flagellar assembly protein FliH -
  P5623_RS06835 (P5623_06835) fliG 1193987..1195003 (-) 1017 WP_017367244.1 flagellar motor switch protein FliG -
  P5623_RS06840 (P5623_06840) fliF 1195015..1196607 (-) 1593 WP_007499608.1 flagellar basal-body MS-ring/collar protein FliF -
  P5623_RS06845 (P5623_06845) fliE 1196658..1196975 (-) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  P5623_RS06850 (P5623_06850) flgC 1196987..1197439 (-) 453 WP_008344813.1 flagellar basal body rod protein FlgC -
  P5623_RS06855 (P5623_06855) flgB 1197439..1197828 (-) 390 WP_017359092.1 flagellar basal body rod protein FlgB -
  P5623_RS06860 (P5623_06860) codY 1198117..1198896 (-) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  P5623_RS06865 (P5623_06865) hslU 1198931..1200331 (-) 1401 WP_008344818.1 HslU--HslV peptidase ATPase subunit -
  P5623_RS06870 (P5623_06870) hslV 1200348..1200893 (-) 546 WP_007499614.1 ATP-dependent protease subunit HslV -
  P5623_RS06875 (P5623_06875) xerC 1200908..1201825 (-) 918 WP_007499616.1 tyrosine recombinase XerC -
  P5623_RS06880 (P5623_06880) trmFO 1201888..1203192 (-) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=807191 P5623_RS06860 WP_007499612.1 1198117..1198896(-) (codY) [Bacillus altitudinis strain DSM 103869]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=807191 P5623_RS06860 WP_007499612.1 1198117..1198896(-) (codY) [Bacillus altitudinis strain DSM 103869]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAACCGGTTAATTTTAAAGAAAT
GGCAGAAACACTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTTGGCTACTCCATTA
ACCAGCAGATTGAAAATGCACGTATGAAAAAAATGCTGGAAGATCGTCAGTTCCCTGAAGAATATACAAAAAGCTTATTC
AATGTCCCTGAAACATCTTCAAACCTTGACATCAACAGTGAGTACACAGCTTTCCCGATTGAGAACCGTGATTTATTCCA
ATCAGGTTTGACAACGATTGTGCCAATCATCGGAGGCGGAGACCGCTTAGGGACGTTAATCCTTTCTCGTTTGCAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGCGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCGGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCGATCAGCTCTCTTTCATATAGTGAGCTTGAAGCGAT
TGAGCATATCTTTGAAGAACTTGATGGAAACGAAGGGCTGCTTGTGGCAAGCAAGATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTAAACGCACTTCGTAAATTAGAAAGTGCAGGCGTTATTGAATCTCGTTCTCTTGGAATGAAGGGAACA
TACATCAAAGTATTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471