Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   P5657_RS15745 Genome accession   NZ_CP120621
Coordinates   2977350..2978129 (-) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain DSM 13019     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2972350..2983129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5657_RS15715 (P5657_15715) fliH 2972369..2973121 (-) 753 WP_003244804.1 flagellar assembly protein FliH -
  P5657_RS15720 (P5657_15720) fliG 2973114..2974130 (-) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  P5657_RS15725 (P5657_15725) fliF 2974143..2975753 (-) 1611 WP_043940114.1 flagellar basal-body MS-ring/collar protein FliF -
  P5657_RS15730 (P5657_15730) fliE 2975799..2976119 (-) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  P5657_RS15735 (P5657_15735) flgC 2976130..2976582 (-) 453 WP_021479294.1 flagellar basal body rod protein FlgC -
  P5657_RS15740 (P5657_15740) flgB 2976582..2976971 (-) 390 WP_043857496.1 flagellar basal body rod protein FlgB -
  P5657_RS15745 (P5657_15745) codY 2977350..2978129 (-) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  P5657_RS15750 (P5657_15750) hslU 2978169..2979572 (-) 1404 WP_043857494.1 HslU--HslV peptidase ATPase subunit -
  P5657_RS15755 (P5657_15755) clpQ 2979589..2980134 (-) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  P5657_RS15760 (P5657_15760) xerC 2980147..2981061 (-) 915 WP_003231988.1 tyrosine recombinase XerC -
  P5657_RS15765 (P5657_15765) trmFO 2981129..2982436 (-) 1308 WP_015715883.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=807069 P5657_RS15745 WP_003220850.1 2977350..2978129(-) (codY) [Bacillus subtilis strain DSM 13019]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=807069 P5657_RS15745 WP_003220850.1 2977350..2978129(-) (codY) [Bacillus subtilis strain DSM 13019]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAGTATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGATCTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACGGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTGCTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467